Topologically associating domains and regulatory landscapes in development, evolution and disease

JJ Tena, JM Santos-Pereira - Frontiers in cell and developmental …, 2021 - frontiersin.org
Animal genomes are folded in topologically associating domains (TADs) that have been
linked to the regulation of the genes they contain by constraining regulatory interactions …

Segmentation and patterning of the vertebrate hindbrain

R Krumlauf, DG Wilkinson - Development, 2021 - journals.biologists.com
During early development, the hindbrain is sub-divided into rhombomeres that underlie the
organisation of neurons and adjacent craniofacial tissues. A gene regulatory network of …

A map of cis-regulatory elements and 3D genome structures in zebrafish

H Yang, Y Luan, T Liu, HJ Lee, L Fang, Y Wang… - Nature, 2020 - nature.com
The zebrafish (Danio rerio) has been widely used in the study of human disease and
development, and about 70% of the protein-coding genes are conserved between the two …

A comparative analysis of planarian genomes reveals regulatory conservation in the face of rapid structural divergence

M Ivanković, JN Brand, L Pandolfini, T Brown… - Nature …, 2024 - nature.com
The planarian Schmidtea mediterranea is being studied as a model species for
regeneration, but the assembly of planarian genomes remains challenging. Here, we report …

A single cell transcriptome atlas of the developing zebrafish hindbrain

M Tambalo, R Mitter, DG Wilkinson - Development, 2020 - journals.biologists.com
Segmentation of the vertebrate hindbrain leads to the formation of rhombomeres, each with
a distinct anteroposterior identity. Specialised boundary cells form at segment borders that …

Yap/Taz-TEAD activity links mechanical cues to progenitor cell behavior during zebrafish hindbrain segmentation

A Voltes, CF Hevia, C Engel-Pizcueta… - …, 2019 - journals.biologists.com
Cells perceive their microenvironment through chemical and physical cues. However, how
the mechanical signals are interpreted during embryonic tissue deformation to result in …

[HTML][HTML] The neurogenic fate of the hindbrain boundaries relies on Notch3-dependent asymmetric cell divisions

CF Hevia, C Engel-Pizcueta, F Udina, C Pujades - Cell Reports, 2022 - cell.com
Elucidating the cellular and molecular mechanisms that regulate the balance between
progenitor cell proliferation and neuronal differentiation in the construction of the embryonic …

Hindbrain rhombomere centers harbor a heterogenous population of dividing progenitors which rely on Notch signaling

C Belmonte-Mateos, L Meister… - Frontiers in Cell and …, 2023 - frontiersin.org
Tissue growth and morphogenesis are interrelated processes, whose tight coordination is
essential for the production of different cell fates and the timely precise allocation of stem cell …

Actomyosin regulation by Eph receptor signaling couples boundary cell formation to border sharpness

J Cayuso, Q Xu, M Addison, DG Wilkinson - Elife, 2019 - elifesciences.org
The segregation of cells with distinct regional identity underlies formation of a sharp border,
which in some tissues serves to organise a boundary signaling centre. It is unclear whether …

Epigenetically distinct synaptic architecture in clonal compartments in the teleostean dorsal pallium

Y Isoe, R Nakamura, S Nonaka, Y Kamei, T Okuyama… - Elife, 2023 - elifesciences.org
The dorsal telencephalon (ie the pallium) exhibits high anatomical diversity across
vertebrate classes. The non-mammalian dorsal pallium accommodates various …