Small RNAs in bacteria and archaea: who they are, what they do, and how they do it

EGH Wagner, P Romby - Advances in genetics, 2015 - Elsevier
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …

Biological control of soil-borne pathogens by fluorescent pseudomonads

D Haas, G Défago - Nature reviews microbiology, 2005 - nature.com
Particular bacterial strains in certain natural environments prevent infectious diseases of
plant roots. How these bacteria achieve this protection from pathogenic fungi has been …

Rfam 12.0: updates to the RNA families database

EP Nawrocki, SW Burge, A Bateman… - Nucleic acids …, 2015 - academic.oup.com
The Rfam database (available at http://rfam. xfam. org) is a collection of non-coding RNA
families represented by manually curated sequence alignments, consensus secondary …

Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo

E Holmqvist, PR Wright, L Li, T Bischler… - The EMBO …, 2016 - embopress.org
The molecular roles of many RNA‐binding proteins in bacterial post‐transcriptional gene
regulation are not well understood. Approaches combining in vivo UV crosslinking with RNA …

Pseudomonas Biocontrol Agents of Soilborne Pathogens: Looking Back Over 30 Years

DM Weller - Phytopathology, 2007 - Am Phytopath Society
Pseudomonas spp. are ubiquitous bacteria in agricultural soils and have many traits that
make them well suited as biocontrol agents of soilborne pathogens. Tremendous progress …

Gac/Rsm signal transduction pathway of γ‐proteobacteria: from RNA recognition to regulation of social behaviour

K Lapouge, M Schubert, FHT Allain… - Molecular …, 2008 - Wiley Online Library
In many γ‐proteobacteria, the conserved GacS/GacA (BarA/UvrY) two‐component system
positively controls the expression of one to five genes specifying small RNAs (sRNAs) that …

Global regulation by CsrA and its RNA antagonists

T Romeo, P Babitzke - Microbiology spectrum, 2018 - Am Soc Microbiol
The sequence-specific RNA binding protein CsrA is employed by diverse bacteria in the
posttranscriptional regulation of gene expression. Its binding interactions with RNA have …

Structure of Escherichia coli Hfq bound to polyriboadenylate RNA

TM Link, P Valentin-Hansen… - Proceedings of the …, 2009 - National Acad Sciences
Hfq is a small, highly abundant hexameric protein that is found in many bacteria and plays a
critical role in mRNA expression and RNA stability. As an “RNA chaperone,” Hfq binds AU …

CsrB sRNA family: sequestration of RNA-binding regulatory proteins

P Babitzke, T Romeo - Current opinion in microbiology, 2007 - Elsevier
Noncoding regulatory RNA molecules, also known as small RNAs, participate in several
bacterial regulatory networks. The central component of the carbon storage regulator (Csr) …

Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post‐transcriptionally by RsmA

Y Irie, M Starkey, AN Edwards, DJ Wozniak… - Molecular …, 2010 - Wiley Online Library
Extracellular polysaccharides are important components of biofilms. In non‐mucoid
Pseudomonas aeruginosa strains, the Pel and Psl polysaccharides are major structural …