APOBEC3B regulates R-loops and promotes transcription-associated mutagenesis in cancer

JL McCann, A Cristini, EK Law, SY Lee, M Tellier… - Nature Genetics, 2023 - nature.com
The single-stranded DNA cytosine-to-uracil deaminase APOBEC3B is an antiviral protein
implicated in cancer. However, its substrates in cells are not fully delineated. Here …

Molecular origins of APOBEC-associated mutations in cancer

M Petljak, J Maciejowski - DNA repair, 2020 - Elsevier
The APOBEC family of cytidine deaminases has been proposed to represent a major
enzymatic source of mutations in cancer. Here, we summarize available evidence that links …

Determinants of base editing outcomes from target library analysis and machine learning

M Arbab, MW Shen, B Mok, C Wilson, Ż Matuszek… - Cell, 2020 - cell.com
Although base editors are widely used to install targeted point mutations, the factors that
determine base editing outcomes are not well understood. We characterized sequence …

The current toolbox for APOBEC drug discovery

MJ Grillo, KFM Jones, MA Carpenter, RS Harris… - Trends in …, 2022 - cell.com
Mutational processes driving genome evolution and heterogeneity contribute to immune
evasion and therapy resistance in viral infections and cancer. APOBEC3 (A3) enzymes …

[HTML][HTML] APOBEC3A catalyzes mutation and drives carcinogenesis in vivo

EK Law, R Levin-Klein, MC Jarvis, H Kim… - Journal of Experimental …, 2020 - rupress.org
The APOBEC3 family of antiviral DNA cytosine deaminases is implicated as the second
largest source of mutation in cancer. This mutational process may be a causal driver or …

APOBEC3B drives PKR-mediated translation shutdown and protects stress granules in response to viral infection

L Manjunath, S Oh, P Ortega, A Bouin… - Nature …, 2023 - nature.com
Double-stranded RNA produced during viral replication and transcription activates both
protein kinase R (PKR) and ribonuclease L (RNase L), which limits viral gene expression …

APOBEC-induced mutations and their cancer effect size in head and neck squamous cell carcinoma

VL Cannataro, SG Gaffney, T Sasaki, N Issaeva… - Oncogene, 2019 - nature.com
Recent studies have revealed the mutational signatures underlying the somatic evolution of
cancer, and the prevalences of associated somatic genetic variants. Here we estimate the …

Identification of new driver and passenger mutations within APOBEC-induced hotspot mutations in bladder cancer

MJ Shi, XY Meng, J Fontugne, CL Chen, F Radvanyi… - Genome medicine, 2020 - Springer
Background APOBEC-driven mutagenesis and functional positive selection of mutated
genes may synergistically drive the higher frequency of some hotspot driver mutations …

Genetic inhibitors of APOBEC3B-induced mutagenesis

TM Mertz, E Rice-Reynolds, L Nguyen… - Genome …, 2023 - genome.cshlp.org
The cytidine deaminases APOBEC3A (A3A) and APOBEC3B (A3B) are prominent mutators
of human cancer genomes. However, tumor-specific genetic modulators of APOBEC …

Mesoscale DNA features impact APOBEC3A and APOBEC3B deaminase activity and shape tumor mutational landscapes

A Sanchez, P Ortega, R Sakhtemani… - Nature …, 2024 - nature.com
Antiviral DNA cytosine deaminases APOBEC3A and APOBEC3B are major sources of
mutations in cancer by catalyzing cytosine-to-uracil deamination. APOBEC3A preferentially …