Metabolic engineering: methodologies and applications

MJ Volk, VG Tran, SI Tan, S Mishra, Z Fatma… - Chemical …, 2022 - ACS Publications
Metabolic engineering aims to improve the production of economically valuable molecules
through the genetic manipulation of microbial metabolism. While the discipline is a little over …

Engineering PGPMOs through gene editing and systems biology: a solution for phytoremediation?

S Basu, RC Rabara, S Negi, P Shukla - Trends in Biotechnology, 2018 - cell.com
In light of extensive urbanization and deforestation, toxic wastes are being released into the
atmosphere, causing increased air and soil pollution. Conventional methods of soil …

Interpreting metabolic complexity via isotope-assisted metabolic flux analysis

B Moiz, G Sriram, AM Clyne - Trends in biochemical sciences, 2023 - cell.com
Isotope-assisted metabolic flux analysis (iMFA) is a powerful method to mathematically
determine the metabolic fluxome from experimental isotope labeling data and a metabolic …

Isotope-assisted metabolic flux analysis: a powerful technique to gain new insights into the human metabolome in health and disease

B Moiz, A Li, S Padmanabhan, G Sriram, AM Clyne - Metabolites, 2022 - mdpi.com
Cell metabolism represents the coordinated changes in genes, proteins, and metabolites
that occur in health and disease. The metabolic fluxome, which includes both intracellular …

Engineering cofactor metabolism for improved protein and glucoamylase production in Aspergillus niger

Y Sui, T Schütze, L Ouyang, H Lu, P Liu, X Xiao… - Microbial Cell …, 2020 - Springer
Background Nicotinamide adenine dinucleotide phosphate (NADPH) is an important
cofactor ensuring intracellular redox balance, anabolism and cell growth in all living …

Approaches to computational strain design in the multiomics era

PC St. John, YJ Bomble - Frontiers in Microbiology, 2019 - frontiersin.org
Modern omics analyses are able to effectively characterize the genetic, regulatory, and
metabolic phenotypes of engineered microbes, yet designing genetic interventions to …

Calcium Carbonate Addition Improves L-Methionine Biosynthesis by Metabolically Engineered Escherichia coli W3110-BL

HY Zhou, WJ Wu, YY Xu, B Zhou, K Niu… - … in Bioengineering and …, 2020 - frontiersin.org
l-Methionine (l-Met) is a sulfur-containing amino acid, which is one of the eight essential
amino acids to human body. In this work, the fermentative production of l-Met with …

How synthetic biology and metabolic engineering can boost the generation of artificial blood using microbial production hosts

AT Frost, IH Jacobsen, A Worberg… - … in Bioengineering and …, 2018 - frontiersin.org
Hemoglobin is an essential protein to the human body as it transports oxygen to organs and
tissues through the bloodstream (Looker et al.,). In recent years, there has been an …

RespectM revealed metabolic heterogeneity powers deep learning for reshaping the DBTL cycle

X Meng, P Xu, F Tao - Iscience, 2023 - cell.com
Synthetic biology, relying on Design-Build-Test-Learn (DBTL) cycle, aims to solve medicine,
manufacturing, and agriculture problems. However, the DBTL cycle's Learn (L) step lacks …

CeCaFLUX: the first web server for standardized and visual instationary 13C metabolic flux analysis

Z Liu, Z Zhang, S Liang, Z Chen, X Xie, T Shen - Bioinformatics, 2022 - academic.oup.com
The number of instationary 13C-metabolic flux (INST-MFA) studies grows every year,
making it more important than ever to ensure the clarity, standardization and reproducibility …