The alternative role of DNA methylation in splicing regulation

GL Maor, A Yearim, G Ast - Trends in Genetics, 2015 - cell.com
Although DNA methylation was originally thought to only affect transcription, emerging
evidence shows that it also regulates alternative splicing. Exons, and especially splice sites …

Isochores and the evolutionary genomics of vertebrates

G Bernardi - Gene, 2000 - Elsevier
The nuclear genomes of vertebrates are mosaics of isochores, very long stretches (≫
300kb) of DNA that are homogeneous in base composition and are compositionally …

Mobile element variation contributes to population-specific genome diversification, gene regulation and disease risk

S Kojima, S Koyama, M Ka, Y Saito, EH Parrish… - Nature …, 2023 - nature.com
Mobile genetic elements (MEs) are heritable mutagens that recursively generate structural
variants (SVs). ME variants (MEVs) are difficult to genotype and integrate in statistical …

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

N Galtier, G Piganeau, D Mouchiroud, L Duret - Genetics, 2001 - academic.oup.com
908 N. Galtier et al. metes averaged over germ cells remain Mendelian. If, however, the
repair process is biased toward, say, G: C pairs, then allele frequencies would evolve in a …

Cytosine methylation and cpg, tpg (cpa) and tpa frequencies

K Jabbari, G Bernardi - Gene, 2004 - Elsevier
An analysis of dinucleotide frequencies was carried out on DNAs from insects and
mammals, as well as on large DNA sequences from the genomes of Drosophila …

DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon–intron structure

S Gelfman, N Cohen, A Yearim, G Ast - Genome research, 2013 - genome.cshlp.org
DNA methylation is known to regulate transcription and was recently found to be involved in
exon recognition via cotranscriptional splicing. We recently observed that exon–intron …

Mammalian retroelements

PL Deininger, MA Batzer - Genome research, 2002 - genome.cshlp.org
The eukaryotic genome has undergone a series of epidemics of amplification of mobile
elements that have resulted in most eukaryotic genomes containing much more of this …

Epigenomics: beyond CpG islands

MJ Fazzari, JM Greally - Nature Reviews Genetics, 2004 - nature.com
Epigenomic studies aim to define the location and nature of the genomic sequences that are
epigenetically modified. Much progress has been made towards whole-genome epigenetic …

Recombination drives the evolution of GC-content in the human genome

J Meunier, L Duret - Molecular biology and evolution, 2004 - academic.oup.com
Unraveling the evolutionary forces responsible for variations of neutral substitution patterns
among taxa or along genomes is a major issue in the identification of functional sequence …

Evolution of lactation: ancient origin and extreme adaptations of the lactation system

CM Lefèvre, JA Sharp… - Annual review of genomics …, 2010 - annualreviews.org
Lactation, an important characteristic of mammalian reproduction, has evolved by exploiting
a diversity of strategies across mammals. Comparative genomics and transcriptomics …