Multi-Omics Driven Assembly and Annotation of the Sandalwood (Santalum album) Genome

HB Mahesh, P Subba, J Advani, MD Shirke… - Plant …, 2018 - academic.oup.com
Indian sandalwood (Santalum album) is an important tropical evergreen tree known for its
fragrant heartwood-derived essential oil and its valuable carving wood. Here, we applied an …

Multiple facets of marine invertebrate conservation genomics

JV Lopez, B Kamel, M Medina, T Collins… - Annual review of …, 2019 - annualreviews.org
Conservation genomics aims to preserve the viability of populations and the biodiversity of
living organisms. Invertebrate organisms represent 95% of animal biodiversity; however, few …

Omics approaches to study gene regulatory networks for development in echinoderms

EK Lowe, C Cuomo, MI Arnone - Briefings in functional …, 2017 - academic.oup.com
Gene regulatory networks (GRNs) describe the interactions for a developmental process at a
given time and space. Historically, perturbation experiments represent one of the key …

A framework for genomics-informed ecophysiological modeling in plants

DR Wang, CR Guadagno, X Mao… - Journal of …, 2019 - academic.oup.com
Dynamic process-based plant models capture complex physiological response across time,
carrying the potential to extend simulations out to novel environments and lend mechanistic …

Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

RM Waterhouse, S Aganezov, Y Anselmetti, J Lee… - BMC biology, 2020 - Springer
Background New sequencing technologies have lowered financial barriers to whole
genome sequencing, but resulting assemblies are often fragmented and far from 'finished' …

[PDF][PDF] Synteny-Based Genome Assembly for 16 Species of Heliconius Butterflies, and an Assessment of Structural Variation across the Genus

FA Seixas, NB Edelman, J Mallet - Genome Biology and …, 2021 - academic.oup.com
Abstract Heliconius butterflies (Lepidoptera: Nymphalidae) are a group of 48 neotropical
species widely studied in evolutionary research. Despite the wealth of genomic data …

Integrating transcriptomic network reconstruction and eQTL analyses reveals mechanistic connections between genomic architecture and Brassica rapa development

RL Baker, WF Leong, MT Brock, MJ Rubin… - PLoS …, 2019 - journals.plos.org
Plant developmental dynamics can be heritable, genetically correlated with fitness and yield,
and undergo selection. Therefore, characterizing the mechanistic connections between the …

Construction of a high-density genetic map from RNA-Seq data for an Arabidopsis bay-0× Shahdara RIL population

EAR Serin, LB Snoek, H Nijveen, LAJ Willems… - Frontiers in …, 2017 - frontiersin.org
High-density genetic maps are essential for high resolution mapping of quantitative traits.
Here, we present a new genetic map for an Arabidopsis Bayreuth× Shahdara recombinant …

Genetic and genomic resources to study natural variation in Brassica rapa

P Lou, S Woody, K Greenham, R VanBuren… - Plant …, 2020 - Wiley Online Library
The globally important crop Brassica rapa, a close relative of Arabidopsis, is an excellent
system for modeling our current knowledge of plant growth on a morphologically diverse …

Allocation to male vs female floral function varies by currency and responds differentially to density and moisture stress

MT Brock, RL Winkelman, MJ Rubin, CE Edwards… - Heredity, 2017 - nature.com
Allocation of finite resources to separate reproductive functions is predicted to vary across
environments and affect fitness. Biomass is the most commonly measured allocation …