Posttranslational modifications and proteinopathies: How guardians of the proteome are defeated

H Olzscha - Biological chemistry, 2019 - degruyter.com
Protein folding is one of the fundamental processes in life and therefore needs to be tightly
regulated. Many cellular quality control systems are in place to ensure that proteostasis is …

On a generalized Levinthal's paradox: The role of long-and short range interactions in complex bio-molecular reactions, including protein and DNA folding

AV Melkikh, DKF Meijer - Progress in Biophysics and Molecular Biology, 2018 - Elsevier
The current protein folding literature is reviewed. Two main approaches to the problem of
folding were selected for this review: geometrical and biophysical. The geometrical …

Predicted loop regions promote aggregation: a study of amyloidogenic domains in the functional amyloid FapC

M Nagaraj, M Ahmed, J Lyngsø, BS Vad… - Journal of molecular …, 2020 - Elsevier
Protein fibrillation is traditionally associated with misfolding, loss of functional phenotype,
and gain of toxicity in neurodegenerative diseases. However, many organisms exploit fibrils …

Protein folding rate evolution upon mutations

JA Vila - Biophysical Reviews, 2023 - Springer
Despite the spectacular success of cutting-edge protein fold prediction methods, many
critical questions remain unanswered, including why proteins can reach their native state in …

Evolutionary aspects of protein structure and folding

EN Trifonov, IN Berezovsky - Current opinion in structural biology, 2003 - Elsevier
The traditional reconstruction of molecular events of the past based on sequence
conservation becomes very vague beyond one to two billion years ago. There are certain …

Network analysis for complex neurodegenerative diseases

C Manzoni, PA Lewis, R Ferrari - Current Genetic Medicine Reports, 2020 - Springer
Abstract Purpose of Review Biomedicine is witnessing a paradigm shift in the way complex
disorders are investigated. In particular, the need for big data interpretation has led to the …

[图书][B] Developing synthetic transport systems

A Melkikh, M Sutormina - 2013 - books.google.com
​ Understanding the general laws of an effective system for the transport of substances in
cells is an important goal of systems and synthetic biology and will help us to answer why …

Chaperonin GroEL: structure and reaction cycle

KA Krishna, GV Rao, KRS Rao - Current protein and peptide …, 2007 - ingentaconnect.com
The structure of Escherichia coli chaperonin GroEL was studied using various experimental
tools. Such studies produced information about its structure with increasing details …

The semantics of the modular architecture of protein structures

JS Hleap, C Blouin - Current Protein and Peptide Science, 2016 - ingentaconnect.com
Protein structures can be conceptualized as context-aware self-organizing systems. One of
its emerging properties is a modular architecture. Such modular architecture has been …

From Genome Mining to Protein Engineering: a structural bioinformatics route

DJ Smith - Computational Biology and Machine Learning for …, 2022 - Springer
This chapter outlines applications in genome mining, along with computational methods to
predict protein structure and protein-ligand docking. It offers a simple computational route to …