Prevalence and methodologies for detection, characterization and subtyping of Listeria monocytogenes and L. ivanovii in foods and environmental sources

JQ Chen, P Regan, P Laksanalamai, S Healey… - Food Science and …, 2017 - Elsevier
Listeria monocytogenes, one of the most important foodborne pathogens, can cause
listeriosis, a lethal disease for humans. L. ivanovii, which is closely related to L …

Comparison of classical multi-locus sequence typing software for next-generation sequencing data

AJ Page, NF Alikhan, HA Carleton… - Microbial …, 2017 - microbiologyresearch.org
Multi-locus sequence typing (MLST) is a widely used method for categorizing bacteria.
Increasingly, MLST is being performed using next-generation sequencing (NGS) data by …

[HTML][HTML] Next generation microbiological risk assessment meta-omics: the next need for integration

L Cocolin, M Mataragas, F Bourdichon… - International Journal of …, 2018 - Elsevier
The development of a multi-omics approach has provided a new approach to the
investigation of microbial communities allowing an integration of data, which can be used to …

An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes

C Henri, P Leekitcharoenphon, HA Carleton… - Frontiers in …, 2017 - frontiersin.org
Background/objectives: Whole genome sequencing (WGS) has proven to be a powerful
subtyping tool for foodborne pathogenic bacteria like L. monocytogenes. The interests of …

Exploring the predictive capability of advanced machine learning in identifying severe disease phenotype in Salmonella enterica

S Karanth, CK Tanui, J Meng, AK Pradhan - Food Research International, 2022 - Elsevier
The past few years have seen a significant increase in availability of whole genome
sequencing information, allowing for its incorporation in predictive modeling for foodborne …

Whole genome sequencing analyses of Listeria monocytogenes that persisted in a milkshake machine for a year and caused illnesses in Washington State

Z Li, A Pérez-Osorio, Y Wang, K Eckmann, WA Glover… - BMC microbiology, 2017 - Springer
Background In 2015, in addition to a United States multistate outbreak linked to
contaminated ice cream, another outbreak linked to ice cream was reported in the Pacific …

Phylogenomic pipeline validation for foodborne pathogen disease surveillance

RE Timme, E Strain, JD Baugher, S Davis… - Journal of Clinical …, 2019 - Am Soc Microbiol
Foodborne pathogen surveillance in the United States is transitioning from strain
identification using restriction digest technology (pulsed-field gel electrophoresis [PFGE]) to …

Comparative evaluation of direct plating and most probable number for enumeration of low levels of Listeria monocytogenes in naturally contaminated ice cream …

Y Chen, R Pouillot, LS Burall, EA Strain… - International journal of …, 2017 - Elsevier
A precise and accurate method for enumeration of low level of Listeria monocytogenes in
foods is critical to a variety of studies. In this study, paired comparison of most probable …

[HTML][HTML] Utility of combining whole genome sequencing with traditional investigational methods to solve foodborne outbreaks of Salmonella infections associated with …

SJ Crowe, A Green, K Hernandez, V Peralta… - Journal of food …, 2017 - Elsevier
High consumption rates and a multitude of brands make multistate foodborne outbreaks of
Salmonella infections associated with chicken challenging to investigate, but whole genome …

Development of machine learning and advanced data analytical techniques to incorporate genomic data in predictive modeling for Salmonella enterica

S Karanth - 2021 - search.proquest.com
The past few decades have seen a renaissance in the field of food safety, with the
increasing usage of genomic data (eg, whole genome sequencing (WGS)) in determining …