Rational engineering of synthetic microbial systems: from single cells to consortia

P Bittihn, MO Din, LS Tsimring, J Hasty - Current opinion in microbiology, 2018 - Elsevier
Highlights•Synthetic biology approaches enable microbial systems engineering.•Versatile
tools rapidly expand regulatory engineering capabilities.•Modular components and …

Synthetic multistability in mammalian cells

R Zhu, JM del Rio-Salgado, J Garcia-Ojalvo… - Science, 2022 - science.org
In multicellular organisms, gene regulatory circuits generate thousands of molecularly
distinct, mitotically heritable states through the property of multistability. Designing synthetic …

Engineering longevity—design of a synthetic gene oscillator to slow cellular aging

Z Zhou, Y Liu, Y Feng, S Klepin, LS Tsimring, L Pillus… - Science, 2023 - science.org
Synthetic biology enables the design of gene networks to confer specific biological
functions, yet it remains a challenge to rationally engineer a biological trait as complex as …

A programmable fate decision landscape underlies single-cell aging in yeast

Y Li, Y Jiang, J Paxman, R O'Laughlin, S Klepin, Y Zhu… - Science, 2020 - science.org
Chromatin instability and mitochondrial decline are conserved processes that contribute to
cellular aging. Although both processes have been explored individually in the context of …

[HTML][HTML] Memorizing environmental signals through feedback and feedforward loops

Y Jiang, N Hao - Current opinion in cell biology, 2021 - Elsevier
Cells in diverse organisms can store the information of previous environmental conditions
for long periods of time. This form of cellular memory adjusts the cell's responses to future …

A landscape view on the interplay between EMT and cancer metastasis

C Li, G Balazsi - NPJ systems biology and applications, 2018 - nature.com
The epithelial–mesenchymal transition (EMT) is a basic developmental process that
converts epithelial cells to mesenchymal cells. Although EMT might promote cancer …

An in vitro model of tumor heterogeneity resolves genetic, epigenetic, and stochastic sources of cell state variability

CE Hayford, DR Tyson, CJ Robbins III, PL Frick… - PLoS …, 2021 - journals.plos.org
Tumor heterogeneity is a primary cause of treatment failure and acquired resistance in
cancer patients. Even in cancers driven by a single mutated oncogene, variability in …

Topology-dependent interference of synthetic gene circuit function by growth feedback

R Zhang, J Li, J Melendez-Alvarez, X Chen… - Nature chemical …, 2020 - nature.com
Growth-mediated feedback between synthetic gene circuits and host organisms leads to
diverse emerged behaviors, including growth bistability and enhanced ultrasensitivity …

Winner-takes-all resource competition redirects cascading cell fate transitions

R Zhang, H Goetz, J Melendez-Alvarez, J Li… - Nature …, 2021 - nature.com
Failure of modularity remains a significant challenge for assembling synthetic gene circuits
with tested modules as they often do not function as expected. Competition over shared …

A dimension reduction approach for energy landscape: identifying intermediate states in metabolism‐EMT network

X Kang, C Li - Advanced Science, 2021 - Wiley Online Library
Dimension reduction is a challenging problem in complex dynamical systems. Here, a
dimension reduction approach of landscape (DRL) for complex dynamical systems is …