Diversity and versatility of p38 kinase signalling in health and disease

B Canovas, AR Nebreda - Nature reviews Molecular cell biology, 2021 - nature.com
The ability of cells to deal with different types of stressful situations in a precise and
coordinated manner is key for survival and involves various signalling networks. Over the …

Causes and consequences of RNA polymerase II stalling during transcript elongation

M Noe Gonzalez, D Blears, JQ Svejstrup - Nature reviews Molecular …, 2021 - nature.com
The journey of RNA polymerase II (Pol II) as it transcribes a gene is anything but a smooth
ride. Transcript elongation is discontinuous and can be perturbed by intrinsic regulatory …

Differential cofactor dependencies define distinct types of human enhancers

C Neumayr, V Haberle, L Serebreni, K Karner… - Nature, 2022 - nature.com
All multicellular organisms rely on differential gene transcription regulated by genomic
enhancers, which function through cofactors that are recruited by transcription factors …

The DNA damage response to transcription stress

H Lans, JHJ Hoeijmakers, W Vermeulen… - … reviews Molecular cell …, 2019 - nature.com
The spatiotemporal control of RNA polymerase II (Pol II)-mediated gene transcription is
tightly and intricately regulated. In addition, preservation of the integrity of the DNA template …

P-TEFb: The master regulator of transcription elongation

K Fujinaga, F Huang, BM Peterlin - Molecular cell, 2023 - cell.com
The positive transcription elongation factor b (P-TEFb) is composed of cyclins T1 or T2 and
cyclin-dependent kinase 9 that regulate the elongation phase of transcription by RNA …

RNA modifications detection by comparative Nanopore direct RNA sequencing

A Leger, PP Amaral, L Pandolfini, C Capitanchik… - Nature …, 2021 - nature.com
RNA molecules undergo a vast array of chemical post-transcriptional modifications (PTMs)
that can affect their structure and interaction properties. In recent years, a growing number of …

Transcription-coupled nucleotide excision repair and the transcriptional response to UV-induced DNA damage

N Nieto Moreno, AM Olthof… - Annual review of …, 2023 - annualreviews.org
Ultraviolet (UV) irradiation and other genotoxic stresses induce bulky DNA lesions, which
threaten genome stability and cell viability. Cells have evolved two main repair pathways to …

Poly (ADP-ribosylation) of P-TEFb by PARP1 disrupts phase separation to inhibit global transcription after DNA damage

H Fu, R Liu, Z Jia, R Li, F Zhu, W Zhu, Y Shao, Y Jin… - Nature cell …, 2022 - nature.com
DNA damage shuts down genome-wide transcription to prevent transcriptional mutagenesis
and to initiate repair signalling, but the mechanism to stall elongating RNA polymerase II …

Discovery of a large-scale, cell-state-responsive allosteric switch in the 7SK RNA using DANCE-MaP

SW Olson, AMW Turner, JW Arney, I Saleem… - Molecular cell, 2022 - cell.com
Summary 7SK is a conserved noncoding RNA that regulates transcription by sequestering
the transcription factor P-TEFb. 7SK function entails complex changes in RNA structure, but …

DNA damage-induced transcription stress triggers the genome-wide degradation of promoter-bound Pol II

B Steurer, RC Janssens, ME Geijer… - Nature …, 2022 - nature.com
The precise regulation of RNA Polymerase II (Pol II) transcription after genotoxic stress is
crucial for proper execution of the DNA damage-induced stress response. While stalling of …