Methicillin-resistant Staphylococcus aureus: an overview of basic and clinical research

NA Turner, BK Sharma-Kuinkel… - Nature Reviews …, 2019 - nature.com
Methicillin-resistant Staphylococcus aureus (MRSA) is one of the most successful modern
pathogens. The same organism that lives as a commensal and is transmitted in both health …

Understanding the mechanisms and drivers of antimicrobial resistance

AH Holmes, LSP Moore, A Sundsfjord, M Steinbakk… - The Lancet, 2016 - thelancet.com
To combat the threat to human health and biosecurity from antimicrobial resistance, an
understanding of its mechanisms and drivers is needed. Emergence of antimicrobial …

Emergence of methicillin resistance predates the clinical use of antibiotics

J Larsen, CL Raisen, X Ba, NJ Sadgrove… - Nature, 2022 - nature.com
The discovery of antibiotics more than 80 years ago has led to considerable improvements
in human and animal health. Although antibiotic resistance in environmental bacteria is …

The incidence of antibiotic resistance within and beyond the agricultural ecosystem: A concern for public health

CD Iwu, L Korsten, AI Okoh - Microbiologyopen, 2020 - Wiley Online Library
The agricultural ecosystem creates a platform for the development and dissemination of
antimicrobial resistance, which is promoted by the indiscriminate use of antibiotics in the …

Microbial strain-level population structure and genetic diversity from metagenomes

DT Truong, A Tett, E Pasolli, C Huttenhower… - Genome …, 2017 - genome.cshlp.org
Among the human health conditions linked to microbial communities, phenotypes are often
associated with only a subset of strains within causal microbial groups. Although it has been …

Genome-based prediction of bacterial antibiotic resistance

M Su, SW Satola, TD Read - Journal of clinical microbiology, 2019 - Am Soc Microbiol
Clinical microbiology has long relied on growing bacteria in culture to determine
antimicrobial susceptibility profiles, but the use of whole-genome sequencing for antibiotic …

Antibiotic resistance—the need for global solutions

R Laxminarayan, A Duse, C Wattal… - The Lancet infectious …, 2013 - thelancet.com
The causes of antibiotic resistance are complex and include human behaviour at many
levels of society; the consequences affect everybody in the world. Similarities with climate …

Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens

S Baker, N Thomson, FX Weill, KE Holt - Science, 2018 - science.org
Whole-genome sequencing (WGS) has been vital for revealing the rapid temporal and
spatial evolution of antimicrobial resistance (AMR) in bacterial pathogens. Some …

Antimicrobial resistance in humans, livestock and the wider environment

M Woolhouse, M Ward… - … Transactions of the …, 2015 - royalsocietypublishing.org
Antimicrobial resistance (AMR) in humans is inter-linked with AMR in other populations,
especially farm animals, and in the wider environment. The relatively few bacterial species …

ClonalFrameML: efficient inference of recombination in whole bacterial genomes

X Didelot, DJ Wilson - PLoS computational biology, 2015 - journals.plos.org
Recombination is an important evolutionary force in bacteria, but it remains challenging to
reconstruct the imports that occurred in the ancestry of a genomic sample. Here we present …