High-throughput single-сell sequencing in cancer research

Q Jia, H Chu, Z Jin, H Long, B Zhu - Signal Transduction and Targeted …, 2022 - nature.com
With advances in sequencing and instrument technology, bioinformatics analysis is being
applied to batches of massive cells at single-cell resolution. High-throughput single-cell …

Single‐cell analysis using droplet microfluidics

K Matuła, F Rivello, WTS Huck - Advanced Biosystems, 2020 - Wiley Online Library
Droplet microfluidics has revolutionized the study of single cells. The ability to
compartmentalize cells within picoliter droplets in microfluidic devices has opened up a wide …

Haplotype-aware analysis of somatic copy number variations from single-cell transcriptomes

T Gao, R Soldatov, H Sarkar, A Kurkiewicz… - Nature …, 2023 - nature.com
Genome instability and aberrant alterations of transcriptional programs both play important
roles in cancer. Single-cell RNA sequencing (scRNA-seq) has the potential to investigate …

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data

J Alquicira-Hernandez, A Sathe, HP Ji, Q Nguyen… - Genome biology, 2019 - Springer
Single-cell RNA sequencing has enabled the characterization of highly specific cell types in
many tissues, as well as both primary and stem cell-derived cell lines. An important facet of …

Single-cell genomic characterization reveals the cellular reprogramming of the gastric tumor microenvironment

A Sathe, SM Grimes, BT Lau, J Chen, C Suarez… - Clinical Cancer …, 2020 - AACR
Purpose: The tumor microenvironment (TME) consists of a heterogenous cellular milieu that
can influence cancer cell behavior. Its characteristics have an impact on treatments such as …

The evolutionary theory of cancer: challenges and potential solutions

L Laplane, CC Maley - Nature Reviews Cancer, 2024 - nature.com
The clonal evolution model of cancer was developed in the 1950s–1970s and became
central to cancer biology in the twenty-first century, largely through studies of cancer …

Advancing cancer research and medicine with single-cell genomics

B Lim, Y Lin, N Navin - Cancer cell, 2020 - cell.com
Single-cell sequencing (SCS) has impacted many areas of cancer research and improved
our understanding of intratumor heterogeneity, the tumor microenvironment, metastasis, and …

Molecular pathogenesis, targeted therapies, and future perspectives for gastric cancer

Y Zeng, RU Jin - Seminars in cancer biology, 2022 - Elsevier
Gastric cancer is a major source of global cancer mortality with limited treatment options and
poor patient survival. As our molecular understanding of gastric cancer improves, we are …

Characterizing allele-and haplotype-specific copy numbers in single cells with CHISEL

S Zaccaria, BJ Raphael - Nature biotechnology, 2021 - nature.com
Single-cell barcoding technologies enable genome sequencing of thousands of individual
cells in parallel, but with extremely low sequencing coverage (< 0.05×) per cell. While the …

Archival single-cell genomics reveals persistent subclones during DCIS progression

K Wang, T Kumar, J Wang, DC Minussi, E Sei, J Li… - Cell, 2023 - cell.com
Ductal carcinoma in situ (DCIS) is a common precursor of invasive breast cancer. Our
understanding of its genomic progression to recurrent disease remains poor, partly due to …