Entropy predicts sensitivity of pseudorandom seeds
Seed design is important for sequence similarity search applications such as read mapping
and average nucleotide identity (ANI) estimation. Although k-mers and spaced k-mers are …
and average nucleotide identity (ANI) estimation. Although k-mers and spaced k-mers are …
Horizontal gene transfer and symbiotic microorganisms regulate the adaptive evolution of intertidal algae, Porphyra sense lato
W Wang, Q Ge, J Wen, H Zhang, Y Guo, Z Li… - Communications …, 2024 - nature.com
Intertidal algae may adapt to environmental challenges by acquiring genes from other
organisms and relying on symbiotic microorganisms. Here, we obtained a symbiont-free and …
organisms and relying on symbiotic microorganisms. Here, we obtained a symbiont-free and …
Designing efficient randstrobes for sequence similarity analyses
M Karami, A Soltani Mohammadi, M Martin… - …, 2024 - academic.oup.com
Motivation Substrings of length k, commonly referred to as k-mers, play a vital role in
sequence analysis. However, k-mers are limited to exact matches between sequences …
sequence analysis. However, k-mers are limited to exact matches between sequences …
AsmMix: an efficient haplotype-resolved hybrid de novo genome assembling pipeline
C Liu, P Wu, X Wu, X Zhao, F Chen, X Cheng… - Frontiers in …, 2024 - frontiersin.org
Accurate haplotyping facilitates distinguishing allele-specific expression, identifying cis-
regulatory elements, and characterizing genomic variations, which enables more precise …
regulatory elements, and characterizing genomic variations, which enables more precise …