A distributed classifier for microrna target prediction with validation through tcga expression data
Background: MicroRNAs (miRNAs) are approximately 22-nucleotide long regulatory RNA
that mediate RNA interference by binding to cognate mRNA target regions. Here, we present …
that mediate RNA interference by binding to cognate mRNA target regions. Here, we present …
REPA: applying pathway analysis to genome-wide transcription factor binding data
P Patra, T Izawa, L Peña-Castillo - IEEE/ACM Transactions on …, 2015 - ieeexplore.ieee.org
Pathway analysis has been extensively applied to aid in the interpretation of the results of
genome-wide transcription profiling studies, and has been shown to successfully find …
genome-wide transcription profiling studies, and has been shown to successfully find …
Fast training on large genomics data using distributed support vector machines
N Theera-Ampornpunt, SG Kim… - 2016 8th …, 2016 - ieeexplore.ieee.org
The field of genomics has seen a glorious explosion of high-quality data, with tremendous
strides having been made in genomic sequencing instruments and computational genomics …
strides having been made in genomic sequencing instruments and computational genomics …
Prediction of enhancer rna activity levels from chip-seq-derived histone modification combinatorial codes
N Theera-Ampornpunt, S Chaterji - 2017 IEEE International …, 2017 - ieeexplore.ieee.org
Motivation: Transcription-regulatory elements (TREs) are critical modulators of gene
transcription, with promoters and enhancers being major hubs for gene regulation. Of these …
transcription, with promoters and enhancers being major hubs for gene regulation. Of these …