Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Deep reticulation: the long legacy of hybridization in vascular plant evolution

GW Stull, KK Pham, PS Soltis, DE Soltis - The Plant Journal, 2023 - Wiley Online Library
Hybridization has long been recognized as a fundamental evolutionary process in plants
but, until recently, our understanding of its phylogenetic distribution and biological …

A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set

O Maurin, A Anest, S Bellot, E Biffin… - American Journal of …, 2021 - Wiley Online Library
Premise To further advance the understanding of the species‐rich, economically and
ecologically important angiosperm order Myrtales in the rosid clade, comprising nine …

Easy353: A tool to get Angiosperms353 genes for phylogenomic research

Z Zhang, P Xie, Y Guo, W Zhou, E Liu… - Molecular Biology and …, 2022 - academic.oup.com
The Angiosperms353 gene set (AGS) consists of a set of 353 universal low-copy nuclear
genes that were selected by examining more than 600 angiosperm species. These genes …

Highly resolved papilionoid legume phylogeny based on plastid phylogenomics

IS Choi, D Cardoso, LP De Queiroz… - Frontiers in Plant …, 2022 - frontiersin.org
Comprising 501 genera and around 14,000 species, Papilionoideae is not only the largest
subfamily of Fabaceae (Leguminosae; legumes), but also one of the most extraordinarily …

Exploring Angiosperms353: An open, community toolkit for collaborative phylogenomic research on flowering plants

WJ Baker, S Dodsworth, F Forest, SW Graham… - 2021 - ttu-ir.tdl.org
The unveiling of the angiosperm (flowering plant) tree of life over the past three decades has
been one of the great success stories of modern plant biology. Flowering plants underpin …

Evolution of 101 Apocynaceae plastomes and phylogenetic implications

Y Wang, CF Zhang, WO Odago, H Jiang… - Molecular phylogenetics …, 2023 - Elsevier
Apocynaceae are one of the ten species-richest angiosperm families. However, the
backbone phylogeny of the family is yet less well supported, and the evolution of plastome …

Evolution and diversification of carboxylesterase-like [4+ 2] cyclases in aspidosperma and iboga alkaloid biosynthesis

MD DeMars, SE O'Connor - Proceedings of the National …, 2024 - National Acad Sciences
Monoterpene indole alkaloids (MIAs) are a large and diverse class of plant natural products,
and their biosynthetic construction has been a subject of intensive study for many years. The …

Phylogenomic and comparative analyses of Coffeeae alliance (Rubiaceae): deep insights into phylogenetic relationships and plastome evolution

SG Amenu, N Wei, L Wu, O Oyebanji, G Hu, Y Zhou… - BMC Plant …, 2022 - Springer
Background The large and diverse Coffeeae alliance clade of subfamily Ixoroideae
(Rubiaceae) consists of 10 tribes,> 90 genera, and> 2000 species. Previous molecular …

Target capture data resolve recalcitrant relationships in the coffee family (Rubioideae, Rubiaceae)

O Thureborn, SG Razafimandimbison… - Frontiers in Plant …, 2022 - frontiersin.org
Subfamily Rubioideae is the largest of the main lineages in the coffee family (Rubiaceae),
with over 8,000 species and 29 tribes. Phylogenetic relationships among tribes and other …