A systematic literature review of the application of user experience studies in cyberinfrastructure for scientific research

KP Singh - Quality and User Experience, 2024 - Springer
Good usability and user-friendliness of cyberinfrastructure tools and technologies are crucial
for increasing their usage and broader adoption in scientific communities. However, there is …

Cracking AlphaFold2: Leveraging the power of artificial intelligence in undergraduate biochemistry curriculums

DJ Boland, NM Ayres - PLOS Computational Biology, 2024 - journals.plos.org
AlphaFold2 is an Artificial Intelligence-based program developed to predict the 3D structure
of proteins given only their amino acid sequence at atomic resolution. Due to the accuracy …

Optimizing throughput of Seq2Seq model training on the IPU platform for AI-accelerated CFD simulations

P Rościszewski, A Krzywaniak, S Iserte, K Rojek… - Future Generation …, 2023 - Elsevier
Abstract Intelligence Processing Units (IPU) have proven useful for many AI applications. In
this paper, we evaluate them within the emerging field of AI for simulation, where traditional …

Performance of Distributed Deep Learning Workloads on a Composable Cyberinfrastructure

Z He, A Saluja, R Lawrence, D Chakravorty… - … and Experience in …, 2023 - dl.acm.org
The next generation of computing systems are likely to rely on disaggregated resources that
can be dynamically reconfigured and customized for researchers to support scientific and …

Hierarchical Autoencoder-based Lossy Compression for Large-scale High-resolution Scientific Data

H Le, J Tao - arXiv preprint arXiv:2307.04216, 2023 - arxiv.org
Lossy compression has become an important technique to reduce data size in many
domains. This type of compression is especially valuable for large-scale scientific data …

Development of a Training Framework for Novel Accelerators

Z He, S Nite, J Winchell, A Nasari, H Le… - 2023 IEEE Frontiers …, 2023 - ieeexplore.ieee.org
In recent years, accelerators such as Graphics Processing Units (GPUs), Field
Programmable Gate Arrays (FPGAs), and Intelligence Processing Units (IPUs) have played …

Developing Synthetic Applications Benchmarks on Composable Cyberinfrastructure: A Study of Scaling Molecular Dynamics Applications on GPUs

RE Lawrence, DK Chakravorty, Z He, F Dang… - … and Experience in …, 2023 - dl.acm.org
The potential for infinite scaling, improved performance, and better sharing of computing
resources motivates researchers to adapt to composable infrastructures. Measuring …

Porting AI/ML Models to Intelligence Processing Units (IPUs)

A Nasari, L Zhai, Z He, H Le, S Cui… - … and Experience in …, 2023 - dl.acm.org
Intelligence processing units (IPUs) are specifically designed accelerators that are
dedicated to support artificial intelligence (AI) and machine learning (ML) workflows. Here …

Insight gained from migrating a machine learning model to intelligence processing units

H Le, Z He, M Le, D Chakravorty, LM Perez… - … and Experience in …, 2024 - dl.acm.org
The discoveries in this paper show that Intelligence Processing Units (IPUs) offer a viable
accelerator alternative to GPUs for machine learning (ML) applications within the fields of …

On Performance Analysis of Graphcore IPUs: Analyzing Squared and Skewed Matrix Multiplication

S Shekofteh, C Alles, N Kochendörfer… - arXiv preprint arXiv …, 2023 - arxiv.org
In recent decades, High Performance Computing (HPC) has undergone significant
enhancements, particularly in the realm of hardware platforms, aimed at delivering …