Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA

C Simon, TR Buckley, F Frati, JB Stewart… - Annu. Rev. Ecol …, 2006 - annualreviews.org
DNA data has been widely used in animal phylogenetic studies over the past 15 years. Here
we review how these studies have used advances in knowledge of molecular evolutionary …

Arthropods on islands: colonization, speciation, and conservation

RG Gillespie, GK Roderick - Annual review of entomology, 2002 - annualreviews.org
▪ Abstract Islands have traditionally been considered to be any relatively small body of land
completely surrounded by water. However, their primary biological characteristic, an …

An approximately unbiased test of phylogenetic tree selection

H Shimodaira - Systematic biology, 2002 - academic.oup.com
An approximately unbiased (AU) test that uses a newly devised multiscale bootstrap
technique was developed for general hypothesis testing of regions in an attempt to reduce …

CONSEL: for assessing the confidence of phylogenetic tree selection

H Shimodaira, M Hasegawa - Bioinformatics, 2001 - academic.oup.com
CONSEL is a program to assess the confidence of the tree selection by giving the p-values
for the trees. The main thrust of the program is to calculate the p-value of the Approximately …

Dengue subgenomic RNA binds TRIM25 to inhibit interferon expression for epidemiological fitness

G Manokaran, E Finol, C Wang, J Gunaratne, J Bahl… - Science, 2015 - science.org
The global spread of dengue virus (DENV) infections has increased viral genetic diversity,
some of which appears associated with greater epidemic potential. The mechanisms …

Molecular phylogenetics of Squamata: the position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree

TM Townsend, A Larson, E Louis… - Systematic biology, 2004 - academic.oup.com
Squamate reptiles (snakes, lizards, and amphisbaenians) serve as model systems for
evolutionary studies of a variety of morphological and behavioral traits, and phylogeny is …

Higher level phylogenetic relationships within the bamboos (Poaceae: Bambusoideae) based on five plastid markers

SA Kelchner, BP Group - Molecular phylogenetics and evolution, 2013 - Elsevier
Bamboos are large perennial grasses of temperate and tropical forests worldwide. Two
general growth forms exist: the economically and ecologically important woody bamboos …

New Zealand phylogeography: evolution on a small continent

GP Wallis, SA Trewick - Molecular ecology, 2009 - Wiley Online Library
New Zealand has long been a conundrum to biogeographers, possessing as it does
geophysical and biotic features characteristic of both an island and a continent. This schism …

Patterns and causes of incongruence between plastid and nuclear Senecioneae (Asteraceae) phylogenies

PB Pelser, AH Kennedy, EJ Tepe… - American journal of …, 2010 - Wiley Online Library
One of the longstanding questions in phylogenetic systematics is how to address
incongruence among phylogenies obtained from multiple markers and how to determine the …

Phylogeny and taxonomic revision of plastid-containing euglenophytes based on SSU rDNA sequence comparisons and synapomorphic signatures in the SSU rRNA …

B Marin, A Palm, MAX Klingberg, M Melkonian - Protist, 2003 - Elsevier
Sequence comparisons and a revised classification of the Euglenophyceae were based on
92 new SSU rDNA sequences obtained from strains of Euglena, Astasia, Phacus …