Haplotype threading: accurate polyploid phasing from long reads

SD Schrinner, RS Mari, J Ebler, M Rautiainen, L Seillier… - Genome biology, 2020 - Springer
Resolving genomes at haplotype level is crucial for understanding the evolutionary history of
polyploid species and for designing advanced breeding strategies. Polyploid phasing still …

Unprecedented organelle genomic variations in morning glories reveal independent evolutionary scenarios of parasitic plants and the diversification of plant …

Y Lin, P Li, Y Zhang, D Akhter, R Pan, Z Fu, M Huang… - BMC biology, 2022 - Springer
Abstract Background The morning glories (Convolvulaceae) are distributed worldwide and
produce economically important crops, medicinal herbs, and ornamentals. Members of this …

Comparative analysis of chloroplast genomes of cultivars and wild species of sweetpotato (Ipomoea batatas [L.] Lam)

S Xiao, P Xu, Y Deng, X Dai, L Zhao, B Heider… - BMC genomics, 2021 - Springer
Abstract Background Sweetpotato (Ipomoea batatas [L.] Lam.) is an important food crop.
However, the genetic information of the nuclear genome of this species is difficult to …

Transcriptome analysis of sweet potato responses to potassium deficiency

F Wang, WF Tan, W Song, ST Yang, S Qiao - BMC genomics, 2022 - Springer
Background As one of three essential nutrients, potassium is regarded as a main limiting
factor for growth and development in plant. Sweet potato (Ipomoea batatas L.) is one of …

Hexaploid sweetpotato (Ipomoea batatas (L.) Lam.) may not be a true type to either auto- or allopolyploid

M Gao, SF Soriano, Q Cao, X Yang, G Lu - PloS one, 2020 - journals.plos.org
To better define the sweetpotato polyploidy, we sought to reconstruct phylogenies of its
subgenomes based on hybridization networks that could trace reticulate lineages of …

Genome-Wide Analysis of the Lateral Organ Boundaries Domain (LBD) Gene Family in Sweet Potato

X Lin, B Tang, R Zhao, Y Wang, Y Lin, L Wu, C Zheng… - 2023 - researchsquare.com
Background Sweet potato (Ipomoea batatas (L.) Lam.) serves as an important food source
for human beings. The lateral organ boundary (LOB) structural domain (LBD) genes are a …