Dynamic steering of HPC scientific workflows: A survey

M Mattoso, J Dias, KACS Ocana, E Ogasawara… - Future Generation …, 2015 - Elsevier
The field of scientific workflow management systems has grown significantly as applications
start using them successfully. In 2007, several active researchers in scientific workflow …

Towards supporting the life cycle of large scale scientific experiments

M Mattoso, C Werner, GH Travassos… - International …, 2010 - inderscienceonline.com
One of the main challenges of scientific experiments is to allow scientists to manage and
exchange their scientific computational resources (data, programs, models, etc.). The …

Integrative approaches to understand the mastery in manipulation of host cytokine networks by protozoan parasites with emphasis on Plasmodium and Leishmania …

A Mahanta, P Ganguli, P Barah, RR Sarkar… - Frontiers in …, 2018 - frontiersin.org
Diseases by protozoan pathogens pose a significant public health concern, particularly in
tropical and subtropical countries, where these are responsible for significant morbidity and …

Sciphy: a cloud-based workflow for phylogenetic analysis of drug targets in protozoan genomes

KACS Ocaña, D de Oliveira, E Ogasawara… - … in Bioinformatics and …, 2011 - Springer
Bioinformatics experiments are rapidly evolving with genomic projects that analyze large
amounts of data. This fact demands high performance computation and opens up for …

Vaccine development against Trypanosoma cruzi and Leishmania species in the post-genomic era

E Dumonteil - Infection, Genetics and Evolution, 2009 - Elsevier
Trypanosoma cruzi and the genus Leishmania are protozoan parasites causing diseases of
major public health importance, and the recent completion of the sequencing of their …

Supporting dynamic parameter sweep in adaptive and user-steered workflow

J Dias, E Ogasawara, D de Oliveira, F Porto… - Proceedings of the 6th …, 2011 - dl.acm.org
Large-scale experiments in computational science are complex to manage. Due to its
exploratory nature, several iterations evaluate a large space of parameter combinations …

User-steering of HPC workflows: state-of-the-art and future directions

M Mattoso, K Ocana, F Horta, J Dias… - Proceedings of the 2nd …, 2013 - dl.acm.org
In 2006 a group of leading researchers was gathered to discuss several challenges to
scientific workflow supporting technologies and many of which still remain open challenges …

The Comparative Genomics and Phylogenomics of Leishmania Amazonensis Parasite

DA Tschoeke, GL Nunes, R Jardim… - Evolutionary …, 2014 - journals.sagepub.com
Leishmaniasis is an infectious disease caused by Leishmania species. Leishmania
amazonensis is a New World Leishmania species belonging to the Mexicana complex …

[PDF][PDF] Gerenciando experimentos científicos em larga escala

M Mattoso, C Werner, G Travassos, V Braganholo… - SBC-SEMISH, 2008 - sbc.org.br
Several scientific areas, such as bioinformatics and oil engineering, need means of
executing simulation-based experiments. The state of the practice for this, in most of the …

Data parallelism in bioinformatics workflows using Hydra

F Coutinho, E Ogasawara, D De Oliveira… - Proceedings of the 19th …, 2010 - dl.acm.org
Large scale bioinformatics experiments are usually composed by a set of data flows
generated by a chain of activities (programs or services) that may be modeled as scientific …