Next-generation mass spectrometry metabolomics revives the functional analysis of plant metabolic diversity

D Li, E Gaquerel - Annual Review of Plant Biology, 2021 - annualreviews.org
The remarkable diversity of specialized metabolites produced by plants has inspired several
decades of research and nucleated a long list of theories to guide empirical ecological …

Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation

N Kubo, H Ishii, X Xiong, S Bianco… - Nature structural & …, 2021 - nature.com
The CCCTC-binding factor (CTCF) works together with the cohesin complex to drive the
formation of chromatin loops and topologically associating domains, but its role in gene …

Understanding the chemodiversity of plants: Quantification, variation and ecological function

H Petrén, RA Anaia, KS Aragam… - Ecological …, 2024 - Wiley Online Library
Plants produce a great number of phytochemicals serving a variety of different functions.
Recently, the chemodiversity of these compounds (ie, the diversity of compounds produced …

Evolutionary dynamics of gene and isoform regulation in Mammalian tissues

J Merkin, C Russell, P Chen, CB Burge - Science, 2012 - science.org
Most mammalian genes produce multiple distinct messenger RNAs through alternative
splicing, but the extent of splicing conservation is not clear. To assess tissue-specific …

Natural history–guided omics reveals plant defensive chemistry against leafhopper pests

Y Bai, C Yang, R Halitschke, C Paetz, D Kessler… - Science, 2022 - science.org
Although much is known about plant traits that function in nonhost resistance against
pathogens, little is known about nonhost resistance against herbivores, despite its …

[HTML][HTML] Conserved and divergent gene regulatory programs of the mammalian neocortex

NR Zemke, EJ Armand, W Wang, S Lee, J Zhou, YE Li… - Nature, 2023 - nature.com
Divergence of cis-regulatory elements drives species-specific traits, but how this manifests in
the evolution of the neocortex at the molecular and cellular level remains unclear. Here we …

AP-1 imprints a reversible transcriptional programme of senescent cells

RI Martínez-Zamudio, PF Roux, JANLF de Freitas… - Nature cell …, 2020 - nature.com
Senescent cells affect many physiological and pathophysiological processes. While select
genetic and epigenetic elements for senescence induction have been identified, the …

Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns

D Sproul, RR Kitchen, CE Nestor, JM Dixon, AH Sims… - Genome biology, 2012 - Springer
Abstract Background Aberrant CpG island promoter DNA hypermethylation is frequently
observed in cancer and is believed to contribute to tumor progression by silencing the …

Evolutionary routes to biochemical innovation revealed by integrative analysis of a plant-defense related specialized metabolic pathway

GD Moghe, BJ Leong, SM Hurney, A Daniel Jones… - Elife, 2017 - elifesciences.org
The diversity of life on Earth is a result of continual innovations in molecular networks
influencing morphology and physiology. Plant specialized metabolism produces hundreds …

How plants sense wounds: damaged-self recognition is based on plant-derived elicitors and induces octadecanoid signaling

M Heil, E Ibarra-Laclette, RM Adame-Alvarez… - PloS one, 2012 - journals.plos.org
Background Animal-derived elicitors can be used by plants to detect herbivory but they
function only in specific insect–plant interactions. How can plants generally perceive …