Copy number variation in domestication

ZN Lye, MD Purugganan - Trends in Plant Science, 2019 - cell.com
Domesticated plants have long served as excellent models for studying evolution. Many
genes and mutations underlying important domestication traits have been identified, and …

Analysis of the genetic loci of pigment pattern evolution in vertebrates

J Elkin, A Martin, V Courtier‐Orgogozo… - Biological …, 2023 - Wiley Online Library
Vertebrate pigmentation patterns are amongst the best characterised model systems for
studying the genetic basis of adaptive evolution. The wealth of available data on the genetic …

Uncovering genes underlying coat color variation in indigenous cattle breeds through genome-wide positive selection

D Rajawat, M Panigrahi, SS Nayak… - Animal …, 2023 - Taylor & Francis
The identification of candidate genes related to pigmentation and under selective sweep
provides insights into the genetic basis of pigmentation and the evolutionary forces that have …

The challenges and importance of structural variation detection in livestock

DM Bickhart, GE Liu - Frontiers in genetics, 2014 - frontiersin.org
Recent studies in humans and other model organisms have demonstrated that structural
variants (SVs) comprise a substantial proportion of variation among individuals of each …

Composite selection signals can localize the trait specific genomic regions in multi-breed populations of cattle and sheep

IAS Randhawa, MS Khatkar, PC Thomson… - BMC genetics, 2014 - Springer
Background Discerning the traits evolving under neutral conditions from those traits evolving
rapidly because of various selection pressures is a great challenge. We propose a new …

Distribution and functionality of copy number variation across European cattle populations

M Upadhyay, VH da Silva, HJ Megens… - Frontiers in …, 2017 - frontiersin.org
Copy number variation (CNV), which is characterized by large-scale losses or gains of DNA
fragments, contributes significantly to genetic and phenotypic variation. Assessing CNV …

Chromosome-level reference genome for North American bison (Bison bison) and variant database aids in identifying albino mutation

S Stroupe, C Martone, B McCann… - G3: Genes …, 2023 - academic.oup.com
We developed a highly contiguous chromosome-level reference genome for North American
bison to provide a platform to evaluate the conservation, ecological, evolutionary, and …

Genomic selection signatures in sheep from the Western Pyrenees

O Ruiz-Larrañaga, J Langa, F Rendo… - Genetics Selection …, 2018 - Springer
Background The current large spectrum of sheep phenotypic diversity results from the
combined product of sheep selection for different production traits such as wool, milk and …

Genome‐wide analysis of homozygosity regions in european simmental bulls

A Cesarani, G Gaspa, A Pauciullo… - Journal of Animal …, 2021 - Wiley Online Library
The study of Runs of Homozygosity (ROH) is a useful approach for the characterization of
the genome of livestock populations. Due to their high relationship with autozygosity, ROH …

The future of livestock management: a review of real-time portable sequencing applied to livestock

HJ Lamb, BJ Hayes, LT Nguyen, EM Ross - Genes, 2020 - mdpi.com
Oxford Nanopore Technologies' MinION has proven to be a valuable tool within human and
microbial genetics. Its capacity to produce long reads in real time has opened up unique …