Spatial omics technologies at multimodal and single cell/subcellular level

J Park, J Kim, T Lewy, CM Rice, O Elemento… - Genome Biology, 2022 - Springer
Spatial omics technologies enable a deeper understanding of cellular organizations and
interactions within a tissue of interest. These assays can identify specific compartments or …

Spatial transcriptomics: recent developments and insights in respiratory research

WJ Wang, LX Chu, LY He, MJ Zhang, KT Dang… - Military Medical …, 2023 - Springer
The respiratory system's complex cellular heterogeneity presents unique challenges to
researchers in this field. Although bulk RNA sequencing and single-cell RNA sequencing …

Custom microfluidic chip design enables cost-effective three-dimensional spatiotemporal transcriptomics with a wide field of view

J Zhu, K Pang, B Hu, R He, N Wang, Z Jiang, P Ji… - Nature Genetics, 2024 - nature.com
Spatial transcriptomic techniques offer unprecedented insights into the molecular
organization of complex tissues. However, integrating cost-effectiveness, high throughput, a …

Open-ST: High-resolution spatial transcriptomics in 3D

M Schott, D León-Periñán, E Splendiani, L Strenger… - Cell, 2024 - cell.com
Spatial transcriptomics (ST) methods unlock molecular mechanisms underlying tissue
development, homeostasis, or disease. However, there is a need for easy-to-use, high …

[HTML][HTML] Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues

Z Bai, D Zhang, Y Gao, B Tao, D Zhang, S Bao… - Cell, 2024 - cell.com
The capability to spatially explore RNA biology in formalin-fixed paraffin-embedded (FFPE)
tissues holds transformative potential for histopathology research. Here, we present …

[HTML][HTML] The neuroendocrine transition in prostate cancer is dynamic and dependent on ASCL1

R Romero, T Chu, TJ González Robles, P Smith, Y Xie… - Nature Cancer, 2024 - nature.com
Lineage plasticity is a hallmark of cancer progression that impacts therapy outcomes, yet the
mechanisms mediating this process remain unclear. Here, we introduce a versatile in vivo …

Hest-1k: A dataset for spatial transcriptomics and histology image analysis

G Jaume, P Doucet, AH Song, MY Lu… - arXiv preprint arXiv …, 2024 - arxiv.org
Spatial transcriptomics enables interrogating the molecular composition of tissue with ever-
increasing resolution and sensitivity. However, costs, rapidly evolving technology, and lack …

Spatial omics advances for in situ RNA biology

J Ren, S Luo, H Shi, X Wang - Molecular Cell, 2024 - cell.com
Spatial regulation of RNA plays a critical role in gene expression regulation and cellular
function. Understanding spatially resolved RNA dynamics and translation is vital for bringing …

Microtechnologies for single-cell and spatial multi-omics

Y Deng, Z Bai, R Fan - Nature Reviews Bioengineering, 2023 - nature.com
Single-cell omics assays allow the identification of the type, subtype and functional state of a
single cell. To put such single-cell data in the context of tissues, spatially resolved omics can …

The myonuclear domain in adult skeletal muscle fibres: past, present and future

JR Bagley, LT Denes, JJ McCarthy… - The Journal of …, 2023 - Wiley Online Library
Most cells in the body are mononuclear whereas skeletal muscle fibres are uniquely
multinuclear. The nuclei of muscle fibres (myonuclei) are usually situated peripherally which …