The immune niche of the liver

ML Cheng, D Nakib, CT Perciani… - Clinical …, 2021 - portlandpress.com
The liver is an essential organ that is critical for the removal of toxins, the production of
proteins, and the maintenance of metabolic homeostasis. Behind each liver functional unit …

[HTML][HTML] Loss of liver function in chronic liver disease: An identity crisis

C Berasain, M Arechederra, J Argemí… - Journal of …, 2023 - Elsevier
Adult hepatocyte identity is constructed throughout embryonic development and fine-tuned
after birth. A multinodular network of transcription factors, along with pre-mRNA splicing …

[HTML][HTML] Single-cell omics analysis reveals functional diversification of hepatocytes during liver regeneration

T Chen, S Oh, S Gregory, X Shen, AM Diehl - JCI insight, 2020 - ncbi.nlm.nih.gov
Adult liver has enormous regenerative capacity; it can regenerate after losing two-thirds of its
mass while sustaining essential metabolic functions. How the liver balances dual demands …

Mapping of mitogen and metabolic sensitivity in organoids defines requirements for human hepatocyte growth

D Hendriks, B Artegiani, T Margaritis… - Nature …, 2024 - nature.com
Mechanisms underlying human hepatocyte growth in development and regeneration are
incompletely understood. In vitro, human fetal hepatocytes (FH) can be robustly grown as …

Control of cell identity by the nuclear receptor HNF4 in organ pathophysiology

V Dubois, B Staels, P Lefebvre, MP Verzi, J Eeckhoute - Cells, 2020 - mdpi.com
Hepatocyte Nuclear Factor 4 (HNF4) is a transcription factor (TF) belonging to the nuclear
receptor family whose expression and activities are restricted to a limited number of organs …

[HTML][HTML] In vivo CRISPR screening identifies BAZ2 chromatin remodelers as druggable regulators of mammalian liver regeneration

Y Jia, L Li, YH Lin, P Gopal, S Shen, K Zhou, X Yu… - Cell Stem Cell, 2022 - cell.com
Identifying new pathways that regulate mammalian regeneration is challenging due to the
paucity of in vivo screening approaches. We employed pooled CRISPR knockout and …

Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver

UV Chembazhi, S Bangru, M Hernaez… - Genome …, 2021 - genome.cshlp.org
The adult liver has an exceptional ability to regenerate, but how it maintains its specialized
functions during regeneration is unclear. Here, we used partial hepatectomy (PHx) in …

An autoimmune pleiotropic SNP modulates IRF5 alternative promoter usage through ZBTB3-mediated chromatin looping

Z Wang, Q Liang, X Qian, B Hu, Z Zheng… - Nature …, 2023 - nature.com
Genetic sharing is extensively observed for autoimmune diseases, but the causal variants
and their underlying molecular mechanisms remain largely unknown. Through systematic …

Chromatin accessibility: biological functions, molecular mechanisms and therapeutic application

Y Chen, R Liang, Y Li, L Jiang, D Ma, Q Luo… - Signal Transduction and …, 2024 - nature.com
The dynamic regulation of chromatin accessibility is one of the prominent characteristics of
eukaryotic genome. The inaccessible regions are mainly located in heterochromatin, which …

Integrative analysis of single-cell RNA-seq and ATAC-seq reveals heterogeneity of induced pluripotent stem cell-derived hepatic organoids

JH Kim, SJ Mun, JH Kim, MJ Son, SY Kim - Iscience, 2023 - cell.com
To gain deeper insights into transcriptomes and epigenomes of organoids, liver organoids
from two states (expandable and more differentiated) were subjected to single-cell RNA-seq …