The gut microbiome reflects ancestry despite dietary shifts across a hybrid zone

DP Nielsen, JG Harrison, NW Byer, TM Faske… - Ecology …, 2023 - Wiley Online Library
The microbiome is critical to an organism's phenotype, and its composition is shaped by,
and a driver of, eco‐evolutionary interactions. We investigated how host ancestry, habitat …

Assembly and annotation of 2 high-quality columbid reference genomes from sequencing of a Columba livia × Columba guinea F1 hybrid

ET Maclary, C Holt, GT Concepcion… - G3: Genes …, 2024 - academic.oup.com
Pigeons and doves (family Columbidae) are one of the most diverse extant avian lineages,
and many species have served as key models for evolutionary genomics, developmental …

Parallel gene expansions drive rapid dietary adaptation in herbivorous woodrats

DM Klure, R Greenhalgh, TJ Orr, MD Shapiro… - Science, 2025 - science.org
How mammalian herbivores evolve to feed on chemically defended plants remains poorly
understood. In this study, we investigated the adaptation of two species of woodrats …

[HTML][HTML] Emerging role of the crosstalk between gut microbiota and liver metabolome of subterranean herbivores in response to toxic plants

Y Tan, B Yao, Y Kang, S Shi, Z Shi, J Su - Ecotoxicology and Environmental …, 2024 - Elsevier
Plant secondary metabolites (PSMs) are a defense mechanism against herbivores, which in
turn use detoxification metabolism to process ingested and absorbed PSMs. The feeding …

Wild herbivorous mammals (genus Neotoma) host a diverse but transient assemblage of fungi

SB Weinstein, WZ Stephens, R Greenhalgh, JL Round… - Symbiosis, 2022 - Springer
Fungi are often overlooked in microbiome research and, as a result, little is known about the
mammalian mycobiome. Although frequently detected in vertebrate guts and known to …

Asymmetric mate preference and reproductive interference mediate climate-induced changes in mate availability in a small mammal hybrid zone

MD Matocq, EA Hunter, PJ Murphy, CL Adkins… - …, 2024 - academic.oup.com
Range expansion and contraction are among the most common biotic responses to
changing environmental conditions, yet much is to be learned about the mechanisms that …

Specific Gene Duplication and Loss of Cytochrome P450 in Families 1-3 in Carnivora (Mammalia, Laurasiatheria)

M Kondo, Y Ikenaka, SMM Nakayama, YK Kawai… - Animals, 2022 - mdpi.com
Simple Summary In this study we investigated the specific duplication and loss events of
cytochrome P450 (CYP) genes in families 1-3 in Carnivora. These genes have been …

The desert woodrat (Neotoma lepida) induces a diversity of biotransformation genes in response to creosote bush resin

R Greenhalgh, DM Klure, TJ Orr, NM Armstrong… - … and Physiology Part C …, 2024 - Elsevier
Liver biotransformation enzymes have long been thought to enable animals to feed on diets
rich in xenobiotic compounds. However, despite decades of pharmacological research in …

The microbiome buffers tadpole hosts from heat stress: a hologenomic approach to understand host–microbe interactions under warming

SS Fontaine, KD Kohl - Journal of Experimental Biology, 2023 - journals.biologists.com
Phenotypic plasticity is an important strategy that animals employ to respond and adjust to
changes in their environment. Plasticity may occur via changes in host gene expression or …

In Silico Analyses of Vertebrate G-Protein-Coupled Receptor Fusions United With or Without an Additional Transmembrane Sequence Indicate Classification into …

T Kamiya, T Masuko, DO Borroto-Escuela, H Okado… - The Protein …, 2024 - Springer
Natural G-protein-coupled receptors (GPCRs) rarely have an additional transmembrane
(TM) helix, such as an artificial TM-linker that can unite two class A GPCRs in tandem as a …