Structural mechanisms for domain movements in proteins

M Gerstein, AM Lesk, C Chothia - Biochemistry, 1994 - ACS Publications
Revised Manuscript Received April 1, 1994* abstract: We survey all the known instances of
domain movements in proteins for which there is crystallographic evidence for …

[PDF][PDF] Malate dehydrogenases-structure and function

P Minarik, N Tomaskova, M Kollarova… - General physiology and …, 2002 - gpb.sav.sk
Malate dehydrogenases (MDH, L-malate: NAD oxidoreductase, EC 1.1. 1.37), catalyze the
NAD/NADH-dependent interconversion of the substrates malate and oxaloacetate. This …

SWISS‐MODEL and the Swiss‐Pdb Viewer: an environment for comparative protein modeling

N Guex, MC Peitsch - electrophoresis, 1997 - Wiley Online Library
Comparative protein modeling is increasingly gaining interest since it is of great assistance
during the rational design of mutagenesis experiments. The availability of this method, and …

Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme

S Hayward, HJC Berendsen - Proteins: structure, function, and …, 1998 - Wiley Online Library
Methods developed originally to analyze domain motions from simulation [Proteins 27: 425–
437, 1997] are adapted and extended for the analysis of X‐ray conformers and for proteins …

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

RB Russell, GJ Barton - Proteins: Structure, Function, and …, 1992 - Wiley Online Library
An algorithm is presented for the accurate and rapid generation of multiple protein sequence
alignments from tertiary structure comparisons. A preliminary multiple sequence alignment is …

Analysis of protein-protein interaction sites using surface patches

S Jones, JM Thornton - Journal of molecular biology, 1997 - Elsevier
Protein-protein interaction sites in complexes of known structure are characterised using a
series of parameters to evaluate what differentiates them from other sites on the protein …

Structural flexibility and protein adaptation to temperature: Molecular dynamics analysis of malate dehydrogenases of marine molluscs

Y Dong, M Liao, X Meng… - Proceedings of the …, 2018 - National Acad Sciences
Orthologous proteins of species adapted to different temperatures exhibit differences in
stability and function that are interpreted to reflect adaptive variation in structural “flexibility.” …

Malate dehydrogenase: a model for structure, evolution, and catalysis

CR Goward, DJ Nicholls - Protein Science, 1994 - Wiley Online Library
Malate dehydrogenases are widely distributed and alignment of the amino acid sequences
show that the enzyme has diverged into 2 main phylogenetic groups. Multiple amino acid …

Adaptations of protein structure and function to temperature: there is more than one way to 'skin a cat'

PA Fields, Y Dong, X Meng… - The Journal of …, 2015 - journals.biologists.com
Sensitivity to temperature helps determine the success of organisms in all habitats, and is
caused by the susceptibility of biochemical processes, including enzyme function, to …

Crystal Structures of the Binary and Ternary Complexes of 7α-Hydroxysteroid Dehydrogenase from Escherichia coli,

N Tanaka, T Nonaka, T Tanabe, T Yoshimoto… - Biochemistry, 1996 - ACS Publications
7α-Hydroxysteroid dehydrogenase (7α-HSDH; 1 EC 1.1. 1.159) is an NAD+-dependent
oxidoreductase belonging to the short-chain dehydrogenase/reductase (SDR) 1 family. It …