An invitation to sequential Monte Carlo samplers

C Dai, J Heng, PE Jacob, N Whiteley - Journal of the American …, 2022 - Taylor & Francis
ABSTRACT Statisticians often use Monte Carlo methods to approximate probability
distributions, primarily with Markov chain Monte Carlo and importance sampling. Sequential …

Elements of sequential monte carlo

CA Naesseth, F Lindsten… - Foundations and Trends …, 2019 - nowpublishers.com
A core problem in statistics and probabilistic machine learning is to compute probability
distributions and expectations. This is the fundamental problem of Bayesian statistics and …

Annealed flow transport monte carlo

M Arbel, A Matthews, A Doucet - … Conference on Machine …, 2021 - proceedings.mlr.press
Abstract Annealed Importance Sampling (AIS) and its Sequential Monte Carlo (SMC)
extensions are state-of-the-art methods for estimating normalizing constants of probability …

Mixing of Hamiltonian Monte Carlo on strongly log-concave distributions: Continuous dynamics

O Mangoubi, A Smith - The Annals of Applied Probability, 2021 - projecteuclid.org
We obtain several quantitative bounds on the mixing properties of an “ideal” Hamiltonian
Monte Carlo (HMC) Markov chain for a strongly log-concave target distribution π on R d. Our …

Bayesian Calibration to Address the Challenge of Antimicrobial Resistance: A Review

C Rosato, PL Green, J Harris, S Maskell, W Hope… - IEEE …, 2024 - ieeexplore.ieee.org
Antimicrobial resistance (AMR) emerges when disease-causing microorganisms develop
the ability to withstand the effects of antimicrobial therapy. This phenomenon is often fueled …

Waste-free sequential monte carlo

HD Dau, N Chopin - Journal of the Royal Statistical Society …, 2022 - academic.oup.com
A standard way to move particles in a sequential Monte Carlo (SMC) sampler is to apply
several steps of a Markov chain Monte Carlo (MCMC) kernel. Unfortunately, it is not clear …

Neo: Non equilibrium sampling on the orbits of a deterministic transform

A Thin, Y Janati El Idrissi, S Le Corff… - Advances in neural …, 2021 - proceedings.neurips.cc
Sampling from a complex distribution $\pi $ and approximating its intractable normalizing
constant $\mathrm {Z} $ are challenging problems. In this paper, a novel family of …

Hamiltonian adaptive importance sampling

A Mousavi, R Monsefi, V Elvira - IEEE Signal Processing Letters, 2021 - ieeexplore.ieee.org
Importance sampling (IS) is a powerful Monte Carlo (MC) methodology for approximating
integrals, for instance in the context of Bayesian inference. In IS, the samples are simulated …

Enhancing ligand and protein sampling using sequential Monte Carlo

M Suruzhon, MS Bodnarchuk, A Ciancetta… - Journal of chemical …, 2022 - ACS Publications
The sampling problem is one of the most widely studied topics in computational chemistry.
While various methods exist for sampling along a set of reaction coordinates, many require …

Subsampling sequential Monte Carlo for static Bayesian models

D Gunawan, KD Dang, M Quiroz, R Kohn… - Statistics and …, 2020 - Springer
We show how to speed up sequential Monte Carlo (SMC) for Bayesian inference in large
data problems by data subsampling. SMC sequentially updates a cloud of particles through …