Proximity-based modalities for biology and medicine

X Liu, A Ciulli - ACS Central Science, 2023 - ACS Publications
Molecular proximity orchestrates biological function, and blocking existing proximities is an
established therapeutic strategy. By contrast, strengthening or creating neoproximity with …

Epigenetic modifications of histones in cancer

Z Zhao, A Shilatifard - Genome biology, 2019 - Springer
The epigenetic modifications of histones are versatile marks that are intimately connected to
development and disease pathogenesis including human cancers. In this review, we will …

H3K4me3 regulates RNA polymerase II promoter-proximal pause-release

H Wang, Z Fan, PV Shliaha, M Miele, RC Hendrickson… - Nature, 2023 - nature.com
Trimethylation of histone H3 lysine 4 (H3K4me3) is associated with transcriptional start sites
and has been proposed to regulate transcription initiation,. However, redundant functions of …

R-loop-derived cytoplasmic RNA–DNA hybrids activate an immune response

MP Crossley, C Song, MJ Bocek, JH Choi… - Nature, 2023 - nature.com
Abstract R-loops are RNA–DNA-hybrid-containing nucleic acids with important cellular
roles. Deregulation of R-loop dynamics can lead to DNA damage and genome instability …

Dynamics of CTCF-and cohesin-mediated chromatin looping revealed by live-cell imaging

M Gabriele, HB Brandão, S Grosse-Holz, A Jha… - Science, 2022 - science.org
Animal genomes are folded into loops and topologically associating domains (TADs) by
CTCF and loop-extruding cohesins, but the live dynamics of loop formation and stability …

Enhancer–promoter interactions and transcription are largely maintained upon acute loss of CTCF, cohesin, WAPL or YY1

THS Hsieh, C Cattoglio, E Slobodyanyuk, AS Hansen… - Nature …, 2022 - nature.com
It remains unclear why acute depletion of CTCF (CCCTC-binding factor) and cohesin only
marginally affects expression of most genes despite substantially perturbing three …

The auxin-inducible degron 2 technology provides sharp degradation control in yeast, mammalian cells, and mice

A Yesbolatova, Y Saito, N Kitamoto… - Nature …, 2020 - nature.com
Protein knockdown using the auxin-inducible degron (AID) technology is useful to study
protein function in living cells because it induces rapid depletion, which makes it possible to …

Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells

B Bintu, LJ Mateo, JH Su, NA Sinnott-Armstrong… - Science, 2018 - science.org
INTRODUCTION Chromatin adopts an intricate three-dimensional (3D) organization in the
nucleus that is critical for many genome processes, from gene regulation to genome …

CRISPR-based genome editing through the lens of DNA repair

TS Nambiar, L Baudrier, P Billon, A Ciccia - Molecular cell, 2022 - cell.com
Genome editing technologies operate by inducing site-specific DNA perturbations that are
resolved by cellular DNA repair pathways. Products of genome editors include DNA breaks …

The dTAG system for immediate and target-specific protein degradation

B Nabet, JM Roberts, DL Buckley, J Paulk… - Nature chemical …, 2018 - nature.com
Dissection of complex biological systems requires target-specific control of the function or
abundance of proteins. Genetic perturbations are limited by off-target effects …