The Natural Product Domain Seeker version 2 (NaPDoS2) webtool relates ketosynthase phylogeny to biosynthetic function

LJ Klau, S Podell, KE Creamer, AM Demko… - Journal of Biological …, 2022 - ASBMB
The Natural Product Domain Seeker (NaPDoS) webtool detects and classifies ketosynthase
(KS) and condensation domains from genomic, metagenomic, and amplicon sequence data …

CryoSeek II: Cryo-EM analysis of glycofibrils from freshwater reveals well-structured glycans coating linear tetrapeptide repeats

T Wang, W Huang, K Xu, Y Sun, QC Zhang… - Proceedings of the …, 2025 - pnas.org
Despite the recent breakthrough in structure determination and prediction of proteins, the
structural investigation of carbohydrates remains a challenge. Here, we report the cryo-EM …

What Was Old Is New Again: The Pennate Diatom Haslea ostrearia (Gaillon) Simonsen in the Multi-Omic Age

N Gabed, F Verret, A Peticca, I Kryvoruchko… - Marine Drugs, 2022 - mdpi.com
The marine pennate diatom Haslea ostrearia has long been known for its characteristic blue
pigment marennine, which is responsible for the greening of invertebrate gills, a natural …

MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes

RD Groussman, S Blaskowski, SN Coesel… - Scientific Data, 2023 - nature.com
Metatranscriptomics generates large volumes of sequence data about transcribed genes in
natural environments. Taxonomic annotation of these datasets depends on availability of …

Genetic Regulation of Diatom Photosynthesis: Understanding and Exploiting Genetic Diversity

C Volpe, M Nymark, T Brembu - Diatom Photosynthesis: From …, 2024 - Wiley Online Library
Diatoms (Bacillariophyceae) are considered to be the most diverse class of algae, including
as many as 250 genera and having possibly as many as 200,000 species. Because of their …

Expansion of photoreception-related gene families may drive ecological adaptation of the dominant diatom species Skeletonema marinoi

S Liu, Q Xu, N Chen - Science of The Total Environment, 2023 - Elsevier
Diatom species of the genus Skeletonema are dominant in global coastal waters with
important roles in marine primary production and global biogeochemical cycling. Many …

[HTML][HTML] Genomic insights into the biosynthesis and physiology of the cyanobacterial neurotoxin 3-N-methyl-2, 3-diaminopropanoic acid (BMAA)

MJQ Mantas, PB Nunn, GA Codd, D Barker - Phytochemistry, 2022 - Elsevier
Cyanobacteria are an ancient clade of photosynthetic prokaryotes, present in many habitats
throughout the world, including water resources. They can present health hazards to …

Transcriptional chronology reveals conserved genes involved in pennate diatom sexual reproduction

S Audoor, G Bilcke, K Pargana, D Belišová… - Molecular …, 2024 - Wiley Online Library
Sexual reproduction is a major driver of adaptation and speciation in eukaryotes. In diatoms,
siliceous microalgae with a unique cell size reduction‐restitution life cycle and among the …

A high-quality genome of the early diverging tychoplanktonic diatom Paralia guyana

J Jian, F Du, B Wang, X Fang, TO Larsen, Y Li… - Scientific Data, 2024 - nature.com
The diatom Paralia guyana is a tychoplanktonic microalgal species that represents one of
the early diverging diatoms. P. guyana can thrive in both planktonic and benthic habitats …

Adaptive laboratory evolution for increased temperature tolerance of the diatom Nitzschia inconspicua

AJ LaPanse, TA Burch, JM Tamburro… - …, 2023 - Wiley Online Library
Outdoor microalgal cultivation for the production of valuable biofuels and bioproducts
typically requires high insolation and strains with high thermal (> 37° C) tolerance. While …