Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

RM Bowers, NC Kyrpides, R Stepanauskas… - Nature …, 2017 - nature.com
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …

Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships

JR Seymour, SA Amin, JB Raina, R Stocker - Nature microbiology, 2017 - nature.com
By controlling nutrient cycling and biomass production at the base of the food web,
interactions between phytoplankton and bacteria represent a fundamental ecological …

Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes

L Eme, D Tamarit, EF Caceres, CW Stairs, V De Anda… - Nature, 2023 - nature.com
In the ongoing debates about eukaryogenesis—the series of evolutionary events leading to
the emergence of the eukaryotic cell from prokaryotic ancestors—members of the Asgard …

A social niche breadth score reveals niche range strategies of generalists and specialists

FAB von Meijenfeldt, P Hogeweg… - Nature Ecology & Evolution, 2023 - nature.com
Generalists can survive in many environments, whereas specialists are restricted to a single
environment. Although a classical concept in ecology, niche breadth has remained …

Ecology and evolution of metabolic cross-feeding interactions in bacteria

G D'Souza, S Shitut, D Preussger, G Yousif… - Natural product …, 2018 - pubs.rsc.org
Literature covered: early 2000s to late 2017 Bacteria frequently exchange metabolites with
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

DH Parks, M Imelfort, CT Skennerton… - Genome …, 2015 - genome.cshlp.org
Large-scale recovery of genomes from isolates, single cells, and metagenomic data has
been made possible by advances in computational methods and substantial reductions in …

Comparative genomics reveals insights into cyanobacterial evolution and habitat adaptation

MY Chen, WK Teng, L Zhao, CX Hu, YK Zhou… - The ISME …, 2021 - academic.oup.com
Cyanobacteria are photosynthetic prokaryotes that inhabit diverse aquatic and terrestrial
environments. However, the evolutionary mechanisms involved in the cyanobacterial habitat …

Mixotrophy in the marine plankton

DK Stoecker, PJ Hansen, DA Caron… - Annual review of marine …, 2017 - annualreviews.org
Mixotrophs are important components of the bacterioplankton, phytoplankton,
microzooplankton, and (sometimes) zooplankton in coastal and oceanic waters. Bacterivory …

Implications of streamlining theory for microbial ecology

SJ Giovannoni, J Cameron Thrash… - The ISME …, 2014 - academic.oup.com
Whether a small cell, a small genome or a minimal set of chemical reactions with self-
replicating properties, simplicity is beguiling. As Leonardo da Vinci reportedly said,'simplicity …

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation

MG Pachiadaki, E Sintes, K Bergauer, JM Brown… - Science, 2017 - science.org
Carbon fixation by chemoautotrophic microorganisms in the dark ocean has a major impact
on global carbon cycling and ecological relationships in the ocean's interior, but the relevant …