Demographic history, selection and functional diversity of the canine genome
The domestic dog represents one of the most dramatic long-term evolutionary experiments
undertaken by humans. From a large wolf-like progenitor, unparalleled diversity in …
undertaken by humans. From a large wolf-like progenitor, unparalleled diversity in …
[HTML][HTML] Grey wolf genomic history reveals a dual ancestry of dogs
The grey wolf (Canis lupus) was the first species to give rise to a domestic population, and
they remained widespread throughout the last Ice Age when many other large mammal …
they remained widespread throughout the last Ice Age when many other large mammal …
PLAG1 and NCAPG‐LCORL in livestock
A Takasuga - Animal Science Journal, 2016 - Wiley Online Library
A recent progress on stature genetics has revealed simple genetic architecture in livestock
animals in contrast to that in humans. PLAG1 and/or NCAPG‐LCORL, both of which are …
animals in contrast to that in humans. PLAG1 and/or NCAPG‐LCORL, both of which are …
OptM: estimating the optimal number of migration edges on population trees using Treemix
RR Fitak - Biology Methods and Protocols, 2021 - academic.oup.com
The software Treemix has become extensively used to estimate the number of migration
events, or edges (m), on population trees from genome-wide allele frequency data …
events, or edges (m), on population trees from genome-wide allele frequency data …
[HTML][HTML] Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology
J Plassais, J Kim, BW Davis, DM Karyadi… - Nature …, 2019 - nature.com
Domestic dog breeds are characterized by an unrivaled diversity of morphologic traits and
breed-associated behaviors resulting from human selective pressures. To identify the …
breed-associated behaviors resulting from human selective pressures. To identify the …
Genomic and archaeological evidence suggest a dual origin of domestic dogs
LAF Frantz, VE Mullin, M Pionnier-Capitan… - Science, 2016 - science.org
The geographic and temporal origins of dogs remain controversial. We generated genetic
sequences from 59 ancient dogs and a complete (28x) genome of a late Neolithic dog …
sequences from 59 ancient dogs and a complete (28x) genome of a late Neolithic dog …
[HTML][HTML] Genomic analyses reveal the influence of geographic origin, migration, and hybridization on modern dog breed development
There are nearly 400 modern domestic dog breeds with a unique histories and genetic
profiles. To track the genetic signatures of breed development, we have assembled the most …
profiles. To track the genetic signatures of breed development, we have assembled the most …
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
Whole transcriptome sequencing (RNA-seq) has become a standard for cataloguing and
monitoring RNA populations. One of the main bottlenecks, however, is to correctly identify …
monitoring RNA populations. One of the main bottlenecks, however, is to correctly identify …
[HTML][HTML] Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity
Tractable microbial communities are needed to bridge the gap between observations of
patterns of microbial diversity and mechanisms that can explain these patterns. We …
patterns of microbial diversity and mechanisms that can explain these patterns. We …
[HTML][HTML] Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture
Abstract Background The international Dog10K project aims to sequence and analyze
several thousand canine genomes. Incorporating 20× data from 1987 individuals, including …
several thousand canine genomes. Incorporating 20× data from 1987 individuals, including …