AlphaFold 2 and NMR spectroscopy: partners to understand protein structure, dynamics and function

DV Laurents - Frontiers in molecular biosciences, 2022 - frontiersin.org
The artificial intelligence program AlphaFold 2 is revolutionizing the field of protein structure
determination as it accurately predicts the 3D structure of two thirds of the human proteome …

Structure–function relationships in protein homorepeats

CA Elena-Real, P Mier, N Sibille… - Current Opinion in …, 2023 - Elsevier
Homorepeats (or polyX), protein segments containing repetitions of the same amino acid,
are abundant in proteomes from all kingdoms of life and are involved in crucial biological …

Metal-peptidic cages—Helical oligoprolines generate highly anisotropic nanospaces with emergent isomer control

BE Barber, EMG Jamieson, LEM White, CT McTernan - Chem, 2024 - cell.com
The self-assembly of metal-organic cages enables the rapid creation of atomically defined,
three-dimensional, nanoscale architectures reminiscent of proteins. However, existing metal …

Glycine-Rich Peptides from FUS Have an Intrinsic Ability to Self-Assemble into Fibers and Networked Fibrils: Published as part of the Biochemistry virtual special …

M Kar, AE Posey, F Dar, AA Hyman, RV Pappu - Biochemistry, 2021 - ACS Publications
Glycine-rich regions feature prominently in intrinsically disordered regions (IDRs) of proteins
that drive phase separation and the regulated formation of membraneless biomolecular …

Hydrogen bonding patterns and cooperativity in polyproline II helical bundles

R López-Sánchez, DV Laurents… - Communications …, 2024 - nature.com
Hydrogen bond cooperativity (HBC) plays an important role in stabilizing protein assemblies
built by α-helices and β-sheets, the most common secondary structures. However, whether …

Proline, a unique amino acid whose polymer, polyproline II helix, and its analogues are involved in many biological processes: a review

T Umumararungu, N Gahamanyi, J Mukiza… - Amino Acids, 2024 - Springer
Proline is a unique amino acid in that its side-chain is cyclised to the backbone, thus giving
proline an exceptional rigidity and a considerably restricted conformational space …

Architectonic principles of polyproline II helix bundle protein domains

CS Rodríguez, DV Laurents - Archives of Biochemistry and Biophysics, 2024 - Elsevier
Glycine rich polyproline II helix assemblies are an emerging class of natural domains found
in several proteins with different functions and diverse origins. The distinct properties of …

Insight into polyproline II helical bundle stability in an antifreeze protein denatured state

MÁ Treviño, R López-Sánchez, MR Moya… - Biophysical …, 2022 - cell.com
The use of polyproline II (PPII) helices in protein design is currently hindered by limitations in
our understanding of their conformational stability and folding. Recent studies of the snow …

Site‐Specific Incorporation of Fluorinated Prolines into Proteins and their Impact on Neighbouring Residues

CA Elena-Real, A Urbanek, A Sagar… - … A European Journal, 2025 - Wiley Online Library
The incorporation of fluorinated amino acids into proteins provides new opportunities to
study biomolecular structure‐function relationships in an elegant manner. The available …

Combining Experiments and Simulations to Examine the Temperature-Dependent Behavior of a Disordered Protein

F Pesce, K Lindorff-Larsen - The Journal of Physical Chemistry B, 2023 - ACS Publications
Intrinsically disordered proteins are a class of proteins that lack stable folded conformations
and instead adopt a range of conformations that determine their biochemical functions. The …