Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D Jin, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

A brief history of de novo protein design: minimal, rational, and computational

DN Woolfson - Journal of Molecular Biology, 2021 - Elsevier
Protein design has come of age, but how will it mature? In the 1980s and the 1990s, the
primary motivation for de novo protein design was to test our understanding of the …

De novo design of discrete, stable 310-helix peptide assemblies

P Kumar, NG Paterson, J Clayden, DN Woolfson - Nature, 2022 - nature.com
The α-helix is pre-eminent in structural biology and widely exploited in protein folding,
design and engineering. Although other helical peptide conformations do exist near to the α …

A defined structural unit enables de novo design of small-molecule–binding proteins

NF Polizzi, WF DeGrado - Science, 2020 - science.org
The de novo design of proteins that bind highly functionalized small molecules represents a
great challenge. To enable computational design of binders, we developed a unit of protein …

Hollow octadecameric self-assembly of collagen-like peptides

LT Yu, MC Hancu, MAB Kreutzberger… - Journal of the …, 2023 - ACS Publications
The folding of collagen is a hierarchical process that starts with three peptides associating
into the characteristic triple helical fold. Depending on the specific collagen in question …

[HTML][HTML] Interactive molecular dynamics in virtual reality from quantum chemistry to drug binding: An open-source multi-person framework

MB O'Connor, SJ Bennie, HM Deeks… - The Journal of …, 2019 - pubs.aip.org
As molecular scientists have made progress in their ability to engineer nanoscale molecular
structure, we face new challenges in our ability to engineer molecular dynamics (MD) and …

Differential sensing with arrays of de novo designed peptide assemblies

WM Dawson, KL Shelley, JM Fletcher, DA Scott… - Nature …, 2023 - nature.com
Differential sensing attempts to mimic the mammalian senses of smell and taste to identify
analytes and complex mixtures. In place of hundreds of complex, membrane-bound G …

Coiled coils 9-to-5: rational de novo design of α-helical barrels with tunable oligomeric states

WM Dawson, FJO Martin, GG Rhys, KL Shelley… - Chemical …, 2021 - pubs.rsc.org
The rational design of linear peptides that assemble controllably and predictably in water is
challenging. Short sequences must encode unique target structures and avoid alternative …

Orthogonal fluorescent chemogenetic reporters for multicolor imaging

AG Tebo, B Moeyaert, M Thauvin… - Nature chemical …, 2021 - nature.com
Spectrally separated fluorophores allow the observation of multiple targets simultaneously
inside living cells, leading to a deeper understanding of the molecular interplay that …

Current trends in protein engineering: updates and progress

R Sinha, P Shukla - Current Protein and Peptide Science, 2019 - ingentaconnect.com
Proteins are one of the most important and resourceful biomolecules that find applications in
health, industry, medicine, research, and biotechnology. Given its tremendous relevance …