Navigating the Landscape: A Comprehensive Review of Current Virus Databases

M Ritsch, NA Cassman, S Saghaei, M Marz - Viruses, 2023 - mdpi.com
Viruses are abundant and diverse entities that have important roles in public health,
ecology, and agriculture. The identification and surveillance of viruses rely on an …

Unraveling the web of viroinformatics: computational tools and databases in virus research

D Sharma, P Priyadarshini, S Vrati - Journal of virology, 2015 - Am Soc Microbiol
The beginning of the second century of research in the field of virology (the first virus was
discovered in 1898) was marked by its amalgamation with bioinformatics, resulting in the …

HBVdb: a knowledge database for Hepatitis B Virus

J Hayer, F Jadeau, G Deleage, A Kay… - Nucleic acids …, 2013 - academic.oup.com
We have developed a specialized database, HBVdb (http://hbvdb. ibcp. fr), allowing the
researchers to investigate the genetic variability of Hepatitis B Virus (HBV) and viral …

Analysis of genomic-length HBV sequences to determine genotype and subgenotype reference sequences

AL McNaughton, PA Revill… - Journal of General …, 2020 - microbiologyresearch.org
Hepatitis B virus (HBV) is a diverse, partially double-stranded DNA virus, with 9 genotypes
(A–I), and a putative 10th genotype (J), characterized thus far. Given the broadening interest …

Envelope proteins derived from naturally integrated hepatitis B virus DNA support assembly and release of infectious hepatitis delta virus particles

N Freitas, C Cunha, S Menne, SO Gudima - Journal of Virology, 2014 - Am Soc Microbiol
ABSTRACT A natural subviral agent of human hepatitis B virus (HBV), hepatitis delta virus
(HDV), requires only the envelope proteins from HBV in order to maintain persistent …

jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus

AK Schultz, I Bulla, M Abdou-Chekaraou… - Nucleic acids …, 2012 - academic.oup.com
Abstract jpHMM is a very accurate and widely used tool for recombination detection in
genomic sequences of HIV-1. Here, we present an extension of jpHMM to analyze …

Mapping the heterogeneity of histone modifications on hepatitis B virus DNA using liver needle biopsies obtained from chronically infected patients

T Flecken, MA Meier, P Skewes-Cox… - Journal of …, 2019 - Am Soc Microbiol
Covalently closed circular DNA (cccDNA) forms the basis for replication and persistence of
hepatitis B virus (HBV) in the chronically infected liver. We have previously shown that viral …

[HTML][HTML] Bioinformatics and database resources in hepatology

A Teufel - Journal of Hepatology, 2015 - Elsevier
Lately, advances in high-throughput technologies in biomedical research have led to a
dramatic increase in the accessibility of molecular insights at multiple biological levels in …

[HTML][HTML] Detection of hyper-conserved regions in hepatitis B virus X gene potentially useful for gene therapy

C González, D Tabernero, MF Cortese… - World Journal of …, 2018 - ncbi.nlm.nih.gov
AIM To detect hyper-conserved regions in the hepatitis B virus (HBV) X gene (HBX) 5'region
that could be candidates for gene therapy. METHODS The study included 27 chronic …

Blocking sense‐strand activity improves potency, safety and specificity of anti‐hepatitis B virus short hairpin RNA

T Michler, S Große, S Mockenhaupt… - EMBO molecular …, 2016 - embopress.org
Hepatitis B virus (HBV) is a promising target for therapies based on RNA interference (RNA
i) since it replicates via RNA transcripts that are vulnerable to RNA i silencing. Clinical …