Identification of tumor antigens with immunopeptidomics

C Chong, G Coukos, M Bassani-Sternberg - Nature biotechnology, 2022 - nature.com
The identification of actionable tumor antigens is indispensable for the development of
several cancer immunotherapies, including T cell receptor–transduced T cells and patient …

[HTML][HTML] Identifying and targeting human tumor antigens for T cell-based immunotherapy of solid tumors

V Leko, SA Rosenberg - Cancer Cell, 2020 - cell.com
Cancer elimination in humans can be achieved with immunotherapy that relies on T
lymphocyte-mediated recognition of tumor antigens. Several types of these antigens have …

A large peptidome dataset improves HLA class I epitope prediction across most of the human population

S Sarkizova, S Klaeger, PM Le, LW Li, G Oliveira… - Nature …, 2020 - nature.com
Prediction of HLA epitopes is important for the development of cancer immunotherapies and
vaccines. However, current prediction algorithms have limited predictive power, in part …

Prediction of peptide mass spectral libraries with machine learning

J Cox - Nature Biotechnology, 2023 - nature.com
The recent development of machine learning methods to identify peptides in complex mass
spectrometric data constitutes a major breakthrough in proteomics. Longstanding methods …

A few good peptides: MHC class I-based cancer immunosurveillance and immunoevasion

D Dersh, J Hollý, JW Yewdell - Nature Reviews Immunology, 2021 - nature.com
The remarkable success of immune checkpoint inhibitors demonstrates the potential of
tumour-specific CD8+ T cells to prevent and treat cancer. Although the number of lives …

Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics

M Wilhelm, DP Zolg, M Graber, S Gessulat… - Nature …, 2021 - nature.com
Characterizing the human leukocyte antigen (HLA) bound ligandome by mass spectrometry
(MS) holds great promise for developing vaccines and drugs for immune-oncology. Still, the …

Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer

T Ouspenskaia, T Law, KR Clauser, S Klaeger… - Nature …, 2022 - nature.com
Tumor-associated epitopes presented on MHC-I that can activate the immune system
against cancer cells are typically identified from annotated protein-coding regions of the …

Towards new horizons: characterization, classification and implications of the tumour antigenic repertoire

SP Haen, MW Löffler, HG Rammensee… - Nature Reviews Clinical …, 2020 - nature.com
Immune-checkpoint inhibition provides an unmatched level of durable clinical efficacy in
various malignancies. Such therapies promote the activation of antigen-specific T cells …

T cell epitope predictions

B Peters, M Nielsen, A Sette - Annual Review of Immunology, 2020 - annualreviews.org
Throughout the body, T cells monitor MHC-bound ligands expressed on the surface of
essentially all cell types. MHC ligands that trigger a T cell immune response are referred to …

Non-mutational neoantigens in disease

LJ Stern, C Clement, L Galluzzi, L Santambrogio - Nature immunology, 2024 - nature.com
The ability of mammals to mount adaptive immune responses culminating with the
establishment of immunological memory is predicated on the ability of the mature T cell …