Current sampling methods for gut microbiota: a call for more precise devices

Q Tang, G Jin, G Wang, T Liu, X Liu… - Frontiers in cellular and …, 2020 - frontiersin.org
The development of next-generation sequencing technology has enabled researchers to
explore and understand the gut microbiome from a broader and deeper perspective …

Enterotypes in the landscape of gut microbial community composition

PI Costea, F Hildebrand, M Arumugam, F Bäckhed… - Nature …, 2018 - nature.com
Population stratification is a useful approach for a better understanding of complex
biological problems in human health and wellbeing. The proposal that such stratification …

Role of dietary fiber in the recovery of the human gut microbiome and its metabolome

C Tanes, K Bittinger, Y Gao, ES Friedman, L Nessel… - Cell host & …, 2021 - cell.com
Gut microbiota metabolites may be important for host health, yet few studies investigate the
correlation between human gut microbiome and production of fecal metabolites and their …

Optimizing methods and dodging pitfalls in microbiome research

D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes… - Microbiome, 2017 - Springer
Research on the human microbiome has yielded numerous insights into health and disease,
but also has resulted in a wealth of experimental artifacts. Here, we present suggestions for …

Gut microbes and the brain: paradigm shift in neuroscience

EA Mayer, R Knight, SK Mazmanian… - Journal of …, 2014 - Soc Neuroscience
The discovery of the size and complexity of the human microbiome has resulted in an
ongoing reevaluation of many concepts of health and disease, including diseases affecting …

Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota

AP Lauder, AM Roche, S Sherrill-Mix, A Bailey… - Microbiome, 2016 - Springer
Background Recent studies have suggested that bacteria associated with the placenta—a
“placental microbiome”—may be important in reproductive health and disease. However, a …

Time of sample collection is critical for the replicability of microbiome analyses

C Allaband, A Lingaraju, S Flores Ramos, T Kumar… - Nature …, 2024 - nature.com
As the microbiome field moves from descriptive and associative research to mechanistic and
interventional studies, being able to account for all confounding variables in the …

[HTML][HTML] Conducting a microbiome study

JK Goodrich, SC Di Rienzi, AC Poole, O Koren… - Cell, 2014 - cell.com
Human microbiome research is an actively developing area of inquiry, with ramifications for
our lifestyles, our interactions with microbes, and how we treat disease. Advances depend …

Fish intestinal microbiome: diversity and symbiosis unravelled by metagenomics

AM Tarnecki, FA Burgos, CL Ray… - Journal of applied …, 2017 - academic.oup.com
The gut microbiome of vertebrates plays an integral role in host health by stimulating
development of the immune system, aiding in nutrient acquisition and outcompeting …

Sample storage conditions significantly influence faecal microbiome profiles

JM Choo, LEX Leong, GB Rogers - Scientific reports, 2015 - nature.com
Sequencing-based studies of the human faecal microbiota are increasingly common.
Appropriate storage of sample material is essential to avoid the introduction of post …