Enhancer–promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness

S Chakraborty, N Kopitchinski, Z Zuo, A Eraso… - Nature …, 2023 - nature.com
How enhancers activate their distal target promoters remains incompletely understood. Here
we dissect how CTCF-mediated loops facilitate and restrict such regulatory interactions …

NR5A2 connects zygotic genome activation to the first lineage segregation in totipotent embryos

F Lai, L Li, X Hu, B Liu, Z Zhu, L Liu, Q Fan, H Tian… - Cell Research, 2023 - nature.com
Zygotic genome activation (ZGA) marks the beginning of the embryonic program for a
totipotent embryo, which gives rise to the inner cell mass (ICM) where pluripotent epiblast …

Maintenance of pluripotency-like signature in the entire ectoderm leads to neural crest stem cell potential

C Pajanoja, J Hsin, B Olinger, A Schiffmacher… - Nature …, 2023 - nature.com
The ability of the pluripotent epiblast to contribute progeny to all three germ layers is thought
to be lost after gastrulation. The later-forming neural crest (NC) rises from ectoderm and it …

3D Enhancer–promoter networks provide predictive features for gene expression and coregulation in early embryonic lineages

D Murphy, E Salataj, DC Di Giammartino… - Nature Structural & …, 2024 - nature.com
Mammalian embryogenesis commences with two pivotal and binary cell fate decisions that
give rise to three essential lineages: the trophectoderm, the epiblast and the primitive …

Multifaceted SOX2-chromatin interaction underpins pluripotency progression in early embryos

L Li, F Lai, X Hu, B Liu, X Lu, Z Lin, L Liu, Y Xiang… - Science, 2023 - science.org
Pioneer transcription factors (TFs), such as OCT4 and SOX2, play crucial roles in
pluripotency regulation. However, the master TF-governed pluripotency regulatory circuitry …

Lineage regulators TFAP2C and NR5A2 function as bipotency activators in totipotent embryos

L Li, F Lai, L Liu, X Lu, X Hu, B Liu, Z Lin… - Nature Structural & …, 2024 - nature.com
During the first lineage segregation, a mammalian totipotent embryo differentiates into the
inner cell mass (ICM) and trophectoderm (TE). However, how transcription factors (TFs) …

Pioneer factors: roles and their regulation in development

A Barral, KS Zaret - Trends in Genetics, 2024 - cell.com
Pioneer factors are a subclass of transcription factors that can bind and initiate opening of
silent chromatin regions. Pioneer factors subsequently regulate lineage-specific genes and …

Carm1-arginine methylation of the transcription factor C/EBPα regulates transdifferentiation velocity

GT Garcia, E Kowenz-Leutz, TV Tian, A Klonizakis… - eLife, 2023 - elifesciences.org
Here, we describe how the speed of C/EBPα-induced B cell to macrophage
transdifferentiation (BMT) can be regulated, using both mouse and human models. The …

Crosstalk between chromatin, chromosomes, and epigenetics

A Ialongo, SY Yeh, HS Rhee - Biochemistry and Cell Biology, 2023 - cdnsciencepub.com
The International Asilomar Chromatin, Chromosomes, and Epigenetics Conference was
held online from 8 to 10 December 2022. Topics of this year's conference included …

Cellular reprogramming in vivo initiated by SOX4 pioneer factor activity

T Katsuda, JH Sussman, K Ito, A Katznelson… - Nature …, 2024 - nature.com
Tissue damage elicits cell fate switching through a process called metaplasia, but how the
starting cell fate is silenced and the new cell fate is activated has not been investigated in …