Optical tweezers in single-molecule biophysics

CJ Bustamante, YR Chemla, S Liu… - Nature Reviews Methods …, 2021 - nature.com
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …

Putting precision and elegance in enzyme immobilisation with bio-orthogonal chemistry

X Pei, Z Luo, L Qiao, Q Xiao, P Zhang… - Chemical Society …, 2022 - pubs.rsc.org
The covalent immobilisation of enzymes generally involves the use of highly reactive
crosslinkers, such as glutaraldehyde, to couple enzyme molecules to each other or to …

Experiments in stochastic thermodynamics: Short history and perspectives

S Ciliberto - Physical Review X, 2017 - APS
We summarize in this article the experiments which have been performed to test the
theoretical findings in stochastic thermodynamics such as fluctuation theorem, Jarzynski …

Inferring entropy production from short experiments

SK Manikandan, D Gupta, S Krishnamurthy - Physical review letters, 2020 - APS
We provide a strategy for the exact inference of the average as well as the fluctuations of the
entropy production in nonequilibrium systems in the steady state, from the measurements of …

Unified approach to classical speed limit and thermodynamic uncertainty relation

VT Vo, T Van Vu, Y Hasegawa - Physical Review E, 2020 - APS
The total entropy production quantifies the extent of irreversibility in thermodynamic systems,
which is nonnegative for any feasible dynamics. When additional information such as the …

Non-complementary strand commutation as a fundamental alternative for information processing by DNA and gene regulation

MP Nikitin - Nature Chemistry, 2023 - nature.com
The discovery of the DNA double helix has revolutionized our understanding of data
processing in living systems, with the complementarity of the two DNA strands providing a …

Martingales for physicists: a treatise on stochastic thermodynamics and beyond

É Roldán, I Neri, R Chetrite, S Gupta… - Advances in …, 2023 - Taylor & Francis
Full article: Martingales for physicists: a treatise on stochastic thermodynamics and beyond
Skip to Main Content Taylor and Francis Online homepage Browse Search Publish Login …

Work fluctuations and Jarzynski equality in stochastic resetting

D Gupta, CA Plata, A Pal - Physical review letters, 2020 - APS
We consider the paradigm of an overdamped Brownian particle in a potential well, which is
modulated through an external protocol, in the presence of stochastic resetting. Thus, in …

Large work extraction and the Landauer limit in a continuous Maxwell demon

M Ribezzi-Crivellari, F Ritort - Nature Physics, 2019 - nature.com
The relation between entropy and information dates back to the classical Maxwell demon
paradox, a thought experiment proposed in 1867 by James Clerk Maxwell to violate the …

Experimental test of the differential fluctuation theorem and a generalized Jarzynski equality for arbitrary initial states

TM Hoang, R Pan, J Ahn, J Bang, HT Quan, T Li - Physical review letters, 2018 - APS
Nonequilibrium processes of small systems such as molecular machines are ubiquitous in
biology, chemistry, and physics but are often challenging to comprehend. In the past two …