Global co-expression network for key factor selection on environmental stress RNA-seq dataset in Capsicum annuum

J Lee, SI Yeom - Scientific Data, 2023 - nature.com
Environmental stresses significantly affect plant growth, development, and productivity.
Therefore, a deeper understanding of the underlying stress responses at the molecular level …

The landscape of abiotic and biotic stress-responsive splice variants with deep RNA-seq datasets in hot pepper

N Kim, J Lee, SI Yeom, NJ Kang, WH Kang - Scientific Data, 2024 - nature.com
Alternative splicing (AS) is a widely observed phenomenon in eukaryotes that plays a critical
role in development and stress responses. In plants, the large number of RNA-seq datasets …

Receptor-like proteins: decision-makers of plant immunity

M Cai, H Yu, E Sun, C Zuo - Phytopathology Research, 2024 - Springer
Receptor-like proteins (RLPs) are crucial pattern-recognition receptors on the surface of
plant cells, which are involved in almost all processes of the plant life cycle. Recently, the …

An improved bacterial mRNA enrichment strategy in dual RNA sequencing to unveil the dynamics of plant-bacterial interactions

J Shilpha, J Lee, JS Kwon, HA Lee, JY Nam, H Jang… - Plant Methods, 2024 - Springer
Background Dual RNA sequencing is a powerful tool that enables a comprehensive
understanding of the molecular dynamics underlying plant-microbe interactions. RNA …

Transcriptomic alterations in the sweet orange vasculature correlate with growth repression induced by a variant of citrus tristeza virus

V Aknadibossian, JC Huguet-Tapia, V Golyaev… - Frontiers in …, 2023 - frontiersin.org
Citrus tristeza virus (CTV, family Closteroviridae) is an economically important pathogen of
citrus. CTV resides in the phloem of the infected plants and induces a range of disease …

Beyond NGS data sharing for plant ecological resilience and improvement of agronomic traits

JS Kwon, J Shilpha, J Lee, SI Yeom - Scientific Data, 2024 - nature.com
Decoding complex plant omics is essential for advancing our understanding of plant biology,
evolution, and breeding as well as for practical applications in agriculture, conservation, and …

Evolutionary and functional analysis reveals the crucial roles of receptor-like proteins in resistance to Valsa canker in Rosaceae

H Yu, E Sun, X Mao, Z Chen, T Xu, L Zuo… - Journal of …, 2023 - academic.oup.com
Rosaceae is an economically important plant family that can be affected by a multitude of
pathogenic microbes, some of which can cause dramatic losses in production. As a type of …

[HTML][HTML] CRS: An online database of Capsicum annuum RNA-seq libraries

H Li, Z Gao, C Tan, H Chen, M Guo, S Liu, L Liu… - Scientia …, 2023 - Elsevier
RNA sequencing (RNA-seq) technique plays an important role in the analyses of gene
expression profiling, transcript variation, non-coding sequence function, and so on. RNA-seq …

CaAOS as a hub gene based on physiological and transcriptomic analyses of cold-resistant and cold-sensitive pepper cultivars

Y Zhang, Z Zhang, Y Ai, H Zhang, Y Chen, R Ye… - International Journal of …, 2024 - Elsevier
The yield and quality of pepper are considerably influenced by the cold conditions. Herein,
we performed morphological, physiological and transcriptomic analyses by using two …

The landscape of sequence variations between resistant and susceptible hot peppers to predict functional candidate genes against bacterial wilt disease

JS Kwon, J Lee, J Shilpha, H Jang, WH Kang - BMC Plant Biology, 2024 - Springer
Background Bacterial wilt (BW), caused by Ralstonia solanacearum (Ral), results in
substantial yield losses in pepper crops. Developing resistant pepper varieties through …