Graph representation learning in biomedicine and healthcare

MM Li, K Huang, M Zitnik - Nature Biomedical Engineering, 2022 - nature.com
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …

[HTML][HTML] Graph-based deep learning for medical diagnosis and analysis: past, present and future

D Ahmedt-Aristizabal, MA Armin, S Denman, C Fookes… - Sensors, 2021 - mdpi.com
With the advances of data-driven machine learning research, a wide variety of prediction
problems have been tackled. It has become critical to explore how machine learning and …

A survey on incorporating domain knowledge into deep learning for medical image analysis

X Xie, J Niu, X Liu, Z Chen, S Tang, S Yu - Medical Image Analysis, 2021 - Elsevier
Although deep learning models like CNNs have achieved great success in medical image
analysis, the small size of medical datasets remains a major bottleneck in this area. To …

Continual segment: Towards a single, unified and non-forgetting continual segmentation model of 143 whole-body organs in ct scans

Z Ji, D Guo, P Wang, K Yan, L Lu… - Proceedings of the …, 2023 - openaccess.thecvf.com
Deep learning empowers the mainstream medical image segmentation methods.
Nevertheless, current deep segmentation approaches are not capable of efficiently and …

A survey on graph neural networks and graph transformers in computer vision: a task-oriented perspective

C Chen, Y Wu, Q Dai, HY Zhou, M Xu, S Yang… - arXiv preprint arXiv …, 2022 - arxiv.org
Graph Neural Networks (GNNs) have gained momentum in graph representation learning
and boosted the state of the art in a variety of areas, such as data mining (\emph {eg,} social …

DeepTarget: Gross tumor and clinical target volume segmentation in esophageal cancer radiotherapy

D Jin, D Guo, TY Ho, AP Harrison, J Xiao… - Medical Image …, 2021 - Elsevier
Gross tumor volume (GTV) and clinical target volume (CTV) delineation are two critical steps
in the cancer radiotherapy planning. GTV defines the primary treatment area of the gross …

Canet: Context aware network for brain glioma segmentation

Z Liu, L Tong, L Chen, F Zhou, Z Jiang… - … on Medical Imaging, 2021 - ieeexplore.ieee.org
Automated segmentation of brain glioma plays an active role in diagnosis decision,
progression monitoring and surgery planning. Based on deep neural networks, previous …

Multi-label classification of fundus images with graph convolutional network and self-supervised learning

J Lin, Q Cai, M Lin - IEEE Signal Processing Letters, 2021 - ieeexplore.ieee.org
The accurate diagnosis of fundus disease can effectively reduce the disease's further
deterioration and provide targeted treatment plans for patients. Fundus image classification …

Multi stain graph fusion for multimodal integration in pathology

C Dwivedi, S Nofallah, M Pouryahya… - Proceedings of the …, 2022 - openaccess.thecvf.com
In pathology, tissue samples are assessed using multiple staining techniques to enhance
contrast in unique histologic features. In this paper, we introduce a multimodal CNN-GNN …

[HTML][HTML] Multimodal data integration for oncology in the era of deep neural networks: a review

A Waqas, A Tripathi, RP Ramachandran… - Frontiers in Artificial …, 2024 - frontiersin.org
Cancer research encompasses data across various scales, modalities, and resolutions, from
screening and diagnostic imaging to digitized histopathology slides to various types of …