Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

B Chevreux, T Pfisterer, B Drescher, AJ Driesel… - Genome …, 2004 - genome.cshlp.org
We present an EST sequence assembler that specializes in reconstruction of pristine mRNA
transcripts, while at the same time detecting and classifying single nucleotide …

A comparative analysis of whole plastid genomes from the Apiales: expansion and contraction of the inverted repeat, mitochondrial to plastid transfer of DNA, and …

SR Downie, RK Jansen - Systematic Botany, 2015 - ingentaconnect.com
Previous mapping studies have revealed that the frequency and large size of inverted repeat
junction shifts in Apiaceae plastomes are unusual among angiosperms. To further examine …

[图书][B] Next generation sequencing technologies and challenges in sequence assembly

S El-Metwally, OM Ouda, M Helmy - 2014 - books.google.com
The introduction of Next Generation Sequencing (NGS) technologies resulted in a major
transformation in the way scientists extract genetic information from biological systems …

Limited correlation of shotgun metagenomics following host depletion and routine diagnostics for viruses and bacteria in low concentrated surrogate and clinical …

CP Oechslin, N Lenz, N Liechti, S Ryter… - Frontiers in cellular …, 2018 - frontiersin.org
The etiologic cause of encephalitis, meningitis or meningo-encephalitis is unknown in up to
70% of cases. Clinical shotgun metagenomics combined with host depletion is a promising …

Genome analysis of Campylobacter jejuni strains isolated from a waterborne outbreak

J Revez, AK Llarena, T Schott, M Kuusi, M Hakkinen… - BMC genomics, 2014 - Springer
Abstract Background Waterborne Campylobacter jejuni outbreaks are common in the Nordic
countries, and PFGE (pulsed field gel electrophoresis) remains the genotyping method of …

Differential transcriptional activity of SAD, FAD2 and FAD3 desaturase genes in developing seeds of linseed contributes to varietal variation in α-linolenic acid content

AV Rajwade, NY Kadoo, SP Borikar, AM Harsulkar… - Phytochemistry, 2014 - Elsevier
Linseed or flax (Linum usitatissimum L.) varieties differ markedly in their seed α-linolenic
acid (ALA) levels. Fatty acid desaturases play a key role in accumulating ALA in seed. We …

Identification and application of threonine aldolase for synthesis of valuable α-amino, β-hydroxy-building blocks

M Ligibel, C Moore, R Bruccoleri… - Biochimica et Biophysica …, 2020 - Elsevier
Chiral β-hydroxy α-amino acid structural motifs are interesting and common synthons
present in multiple APIs and drug candidates. To access these chiral building blocks either …

Immunogenicity and protective effect of recombinant Brucella abortus Ndk (rNdk) against a virulent strain B. abortus 544 infection in BALB/c mice

HT Hop, HL Simborio, AWB Reyes… - FEMS Microbiology …, 2015 - academic.oup.com
Twitching motility, involving type IV pili, is essential for host colonization and virulence of
many pathogenic bacteria. Studies of PilY1, a tip-associated type IV pili protein, indicate that …

Full-Length De Novo Sequence of the Chlamydophila psittaci Type Strain, 6BC

A Voigt, G Schöfl, A Heidrich, K Sachse, HP Saluz - 2011 - Am Soc Microbiol
Full-Length De Novo Sequence of the Chlamydophila psittaci Type Strain, 6BC | Journal of
Bacteriology CLOSE This Journal Anywhere Enter words / phrases / DOI / ISBN / keywords …

The use of next-generation sequencing in the identification of a fastidious pathogen: a lesson from a clinical setup

ATM Saeb, M Abouelhoda… - Evolutionary …, 2017 - journals.sagepub.com
Clostridium haemolyticum is the causal agent of bacillary hemoglobinuria in cattle, goat,
sheep, and ruminants. In this study, we report the first recorded human-infecting C …