Exploring chemical space for drug discovery using the chemical universe database

JL Reymond, M Awale - ACS chemical neuroscience, 2012 - ACS Publications
Herein we review our recent efforts in searching for bioactive ligands by enumeration and
virtual screening of the unknown chemical space of small molecules. Enumeration from first …

[HTML][HTML] Polypharmacology modelling using proteochemometrics (PCM): recent methodological developments, applications to target families, and future prospects

I Cortés-Ciriano, QU Ain, V Subramanian… - …, 2015 - pubs.rsc.org
Proteochemometric (PCM) modelling is a computational method to model the bioactivity of
multiple ligands against multiple related protein targets simultaneously. Hence it has been …

[HTML][HTML] Benchmarking of protein descriptor sets in proteochemometric modeling (part 1): comparative study of 13 amino acid descriptor sets

GJP van Westen, RF Swier, JK Wegner… - Journal of …, 2013 - Springer
Background While a large body of work exists on comparing and benchmarking of
descriptors of molecular structures, a similar comparison of protein descriptor sets is lacking …

Computer aided drug design for multi-target drug design: SAR/QSAR, molecular docking and pharmacophore methods

A Abdolmaleki, JB Ghasemi, F Ghasemi - Current drug targets, 2017 - ingentaconnect.com
Multi-target drugs against particular multiple targets get better protection, resistance profiles
and curative influence by cooperative rules of a key beneficial target with resistance …

[HTML][HTML] Benchmarking of protein descriptor sets in proteochemometric modeling (part 2): modeling performance of 13 amino acid descriptor sets

GJP van Westen, RF Swier, I Cortes-Ciriano… - Journal of …, 2013 - Springer
Background While a large body of work exists on comparing and benchmarking descriptors
of molecular structures, a similar comparison of protein descriptor sets is lacking. Hence, in …

Structural insights into the molecular basis of the ligand promiscuity

N Sturm, J Desaphy, RJ Quinn, D Rognan… - Journal of chemical …, 2012 - ACS Publications
Selectivity is a key factor in drug development. In this paper, we questioned the Protein Data
Bank to better understand the reasons for the promiscuity of bioactive compounds. We …

[HTML][HTML] Global analysis of small molecule binding to related protein targets

FA Kruger, JP Overington - PLoS computational biology, 2012 - journals.plos.org
We report on the integration of pharmacological data and homology information for a large
scale analysis of small molecule binding to related targets. Differences in small molecule …

[HTML][HTML] A One Pot Synthesis of Novel Bioactive Tri-Substitute-Condensed-Imidazopyridines that Targets Snake Venom Phospholipase A2

NC Anilkumar, MS Sundaram, CD Mohan… - PloS one, 2015 - journals.plos.org
Drugs such as necopidem, saripidem, alpidem, zolpidem, and olprinone contain nitrogen-
containing bicyclic, condensed-imidazo [1, 2-α] pyridines as bioactive scaffolds. In this work …

[HTML][HTML] Proteochemometric modeling in a Bayesian framework

I Cortes-Ciriano, GJP van Westen, EB Lenselink… - Journal of …, 2014 - Springer
Proteochemometrics (PCM) is an approach for bioactivity predictive modeling which models
the relationship between protein and chemical information. Gaussian Processes (GP) …

Odour perception: A review of an intricate signalling pathway

A Tromelin - Flavour and Fragrance Journal, 2016 - Wiley Online Library
The perception of odours is the result of the complex processing of a signal, which initiates
at peripheral receptors and ends in the brain. Along this pathway, olfactory signal …