Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
Computational models are often employed in systems biology to study the dynamic
behaviours of complex systems. With the rise in the number of computational models, finding …
behaviours of complex systems. With the rise in the number of computational models, finding …
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022
M König, P Gleeson, M Golebiewski… - Journal of Integrative …, 2023 - degruyter.com
This special issue of the Journal of Integrative Bioinformatics contains updated
specifications of COMBINE standards in systems and synthetic biology. The 2022 special …
specifications of COMBINE standards in systems and synthetic biology. The 2022 special …
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024
M Golebiewski, G Bader, P Gleeson… - Journal of Integrative …, 2024 - degruyter.com
The “COmputational Modeling in BIology NEtwork”(COMBINE) initiative aims to harmonise
the development of diverse community standards for computational models in biology [1, 2] …
the development of diverse community standards for computational models in biology [1, 2] …
StonPy: a tool to parse and query collections of SBGN maps in a graph database
The systems biology graphical notation (SBGN) has become the de facto standard for the
graphical representation of molecular maps. Having rapid and easy access to the content of …
graphical representation of molecular maps. Having rapid and easy access to the content of …
Specifications of standards in systems and synthetic biology: status and developments in 2020
Specifications of standards in systems and synthetic biology: status and developments in 2020
Skip to content Should you have institutional access? Here's how to get it ... De Gruyter € EUR …
Skip to content Should you have institutional access? Here's how to get it ... De Gruyter € EUR …
Specifications of standards in systems and synthetic biology
Standards shape our everyday life. From nuts and bolts to electronic devices and
technological processes, standardised products and processes are all around us. Standards …
technological processes, standardised products and processes are all around us. Standards …
STON: exploring biological pathways using the SBGN standard and graph databases
Abstract Background When modeling in Systems Biology and Systems Medicine, the data is
often extensive, complex and heterogeneous. Graphs are a natural way of representing …
often extensive, complex and heterogeneous. Graphs are a natural way of representing …
Metabolomics, standards, and metabolic modeling for synthetic biology in plants
Life on earth depends on dynamic chemical transformations that enable cellular functions,
including electron transfer reactions, as well as synthesis and degradation of biomolecules …
including electron transfer reactions, as well as synthesis and degradation of biomolecules …
A detailed map of coupled circadian clock and cell cycle with qualitative dynamics validation
Background The temporal coordination of biological processes by the circadian clock is an
important mechanism, and its disruption has negative health outcomes, including cancer …
important mechanism, and its disruption has negative health outcomes, including cancer …
VANTED: a tool for integrative visualization and analysis of-omics data
A Hartmann, AM Jozefowicz - Plant Membrane Proteomics: Methods and …, 2018 - Springer
The investigation of biological systems from different perspectives leads, due to novel-omics
technologies, to large-scale, heterogeneous, and complex datasets. To elucidate molecular …
technologies, to large-scale, heterogeneous, and complex datasets. To elucidate molecular …