Protein data bank: a comprehensive review of 3D structure holdings and worldwide utilization by researchers, educators, and students

SK Burley, HM Berman, JM Duarte, Z Feng, JW Flatt… - Biomolecules, 2022 - mdpi.com
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB),
funded by the United States National Science Foundation, National Institutes of Health, and …

RCSB Protein Data Bank (RCSB. org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from …

SK Burley, C Bhikadiya, C Bi, S Bittrich… - Nucleic acids …, 2023 - academic.oup.com
Abstract The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB
PDB), founding member of the Worldwide Protein Data Bank (wwPDB), is the US data center …

Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future

SK Burley, HM Berman, W Chiu, W Dai, JW Flatt… - Biophysical …, 2022 - Springer
As a discipline, structural biology has been transformed by the three-dimensional electron
microscopy (3DEM)“Resolution Revolution” made possible by convergence of robust cryo …

Prediction and control in DNA nanotechnology

M DeLuca, S Sensale, PA Lin, G Arya - ACS applied bio materials, 2023 - ACS Publications
DNA nanotechnology is a rapidly developing field that uses DNA as a building material for
nanoscale structures. Key to the field's development has been the ability to accurately …

Bioinformatics analysis based on extracted ingredients combined with network pharmacology, molecular docking and molecular dynamics simulation to explore the …

X Han, A Zhang, Z Meng, Q Wang, S Liu, Y Wang… - Heliyon, 2024 - cell.com
Objective Jinbei oral liquid (JBOL), which is derived from a traditional hospital preparation, is
frequently utilized to treat idiopathic pulmonary fibrosis (IPF) and has shown efficacy in …

Presenilin-1-Derived Circular RNAs: Neglected Epigenetic Regulators with Various Functions in Alzheimer's Disease

N Sanadgol, J Amini, C Beyer, A Zendedel - Biomolecules, 2023 - mdpi.com
The presenilin-1 (PSEN1) gene is crucial in developing Alzheimer's disease (AD), a
progressive neurodegenerative disorder and the most common cause of dementia. Circular …

Wogonin inhibits the migration and invasion of fibroblast-like synoviocytes by targeting PI3K/AKT/NF-κB pathway in rheumatoid arthritis

H Yang, C Liu, X Lin, X Li, S Zeng, Z Gong, Q Xu… - Archives of Biochemistry …, 2024 - Elsevier
Background Rheumatoid arthritis (RA) is currently an autoimmune inflammatory disease
with an unclear pathogenesis. Fibroblast-like synoviocytes (FLSs) have tumor-like …

Qixian granule inhibits ferroptosis in vascular endothelial cells by modulating TRPML1 in the lysosome to prevent postmenopausal atherosclerosis

M Zhang, C Mao, Y Dai, X Xu, X Wang - Journal of Ethnopharmacology, 2024 - Elsevier
Abstract Ethnopharmacological relevance QiXian Granule (QXG) is an integrated traditional
Chinese medicine formula used to treat postmenopausal atherosclerotic (AS) cardiovascular …

Analysis of action of 1, 4-naphthoquinone scaffold-derived compounds against acute myeloid leukemia based on network pharmacology, molecular docking and …

R Chen, H Liu, W Meng, J Sun - Scientific Reports, 2024 - nature.com
Naphthoquinone scaffold-derived compounds has shown considerable pharmacological
properties against cancer, including acute myeloid leukemia (AML) However, its impact and …

Comprehensive analysis of microRNA methylation profiles and determination of their functional significance in colorectal cancer: A study protocol

NS Ab Mutalib, I Ismail… - … In Microbes & …, 2023 - journals.hh-publisher.com
Colorectal cancer (CRC) is a leading cause of cancer-associated fatalities globally. Despite
the notable progress in diagnostics and patient care, challenges persist in areas such as …