Techniques for the analysis of protein-protein interactions in vivo

S Xing, N Wallmeroth, KW Berendzen… - Plant physiology, 2016 - academic.oup.com
Identifying key players and their interactions is fundamental for understanding biochemical
mechanisms at the molecular level. The ever-increasing number of alternative ways to …

Omics for the improvement of abiotic, biotic, and agronomic traits in major cereal crops: Applications, challenges, and prospects

B Kaur, KS Sandhu, R Kamal, K Kaur, J Singh… - Plants, 2021 - mdpi.com
Omics technologies, namely genomics, transcriptomics, proteomics, metabolomics, and
phenomics, are becoming an integral part of virtually every commercial cereal crop breeding …

Victors: a web-based knowledge base of virulence factors in human and animal pathogens

S Sayers, L Li, E Ong, S Deng, G Fu, Y Lin… - Nucleic acids …, 2019 - academic.oup.com
Virulence factors (VFs) are molecules that allow microbial pathogens to overcome host
defense mechanisms and cause disease in a host. It is critical to study VFs for better …

Plant Regulomics: a data‐driven interface for retrieving upstream regulators from plant multi‐omics data

X Ran, F Zhao, Y Wang, J Liu, Y Zhuang, L Ye… - The Plant …, 2020 - Wiley Online Library
High‐throughput technology has become a powerful approach for routine plant research.
Interpreting the biological significance of high‐throughput data has largely focused on the …

PPIM: a protein-protein interaction database for maize

G Zhu, A Wu, XJ Xu, PP Xiao, L Lu, J Liu, Y Cao… - Plant …, 2016 - academic.oup.com
Maize (Zea mays) is one of the most important crops worldwide. To understand the
biological processes underlying various traits of the crop (eg yield and response to stress), a …

Toward integrated multi-omics intervention: rice trait improvement and stress management

Z Iqbal, MS Iqbal, MIR Khan, MI Ansari - Frontiers in Plant Science, 2021 - frontiersin.org
Rice (Oryza sativa) is an imperative staple crop for nearly half of the world's population.
Challenging environmental conditions encompassing abiotic and biotic stresses negatively …

A computational systems biology study for understanding salt tolerance mechanism in rice

J Wang, L Chen, Y Wang, J Zhang, Y Liang, D Xu - PLoS one, 2013 - journals.plos.org
Salinity is one of the most common abiotic stresses in agriculture production. Salt tolerance
of rice (Oryza sativa) is an important trait controlled by various genes. The mechanism of rice …

Proteome-wide prediction of protein-protein interactions from high-throughput data

ZP Liu, L Chen - Protein & cell, 2012 - academic.oup.com
In this paper, we present a brief review of the existing computational methods for predicting
proteome-wide protein-protein interaction networks from high-throughput data. The …

[HTML][HTML] Databases and bioinformatics tools for rice research

P Garg, P Jaiswal - Current Plant Biology, 2016 - Elsevier
Rice is one of the most important agricultural crop in the world and widely studied model
plant. The completion of whole genome sequence of rice (Oryza sativa) and high-throughput …

Exploring dynamic protein-protein interactions in cassava through the integrative interactome network

R Thanasomboon, S Kalapanulak, S Netrphan… - Scientific reports, 2020 - nature.com
Protein-protein interactions (PPIs) play an essential role in cellular regulatory processes.
Despite, in-depth studies to uncover the mystery of PPI-mediated regulations are still …