A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

X-ray-based 3D virtual histology—Adding the next dimension to histological analysis

J Albers, S Pacilé, MA Markus, M Wiart… - Molecular Imaging and …, 2018 - Springer
Histology and immunohistochemistry of thin tissue sections have been the standard
diagnostic procedure in many diseases for decades. This method is highly specific for …

Three-dimensional virtual histology of human cerebellum by X-ray phase-contrast tomography

M Töpperwien, F van der Meer… - Proceedings of the …, 2018 - National Acad Sciences
To quantitatively evaluate brain tissue and its corresponding function, knowledge of the 3D
cellular distribution is essential. The gold standard to obtain this information is histology, a …

[HTML][HTML] X-ray micro-computed tomography for nondestructive three-dimensional (3D) X-ray histology

OL Katsamenis, M Olding, JA Warner… - The American journal of …, 2019 - Elsevier
Historically, micro-computed tomography (μCT) has been considered unsuitable for
histologic analysis of unstained formalin-fixed, paraffin-embedded soft tissue biopsy …

Hard X‐ray nanoholotomography: large‐scale, label‐free, 3D neuroimaging beyond optical limit

A Khimchenko, C Bikis, A Pacureanu… - Advanced …, 2018 - Wiley Online Library
There have been great efforts on the nanoscale 3D probing of brain tissues to image
subcellular morphologies. However, limitations in terms of tissue coverage, anisotropic …

[PDF][PDF] 3D virtual histology of human pancreatic tissue by multiscale phase-contrast X-ray tomography

J Frohn, D Pinkert-Leetsch… - Journal of …, 2020 - journals.iucr.org
A multiscale three-dimensional (3D) virtual histology approach is presented, based on two
configurations of propagation phase-contrast X-ray tomography, which have been …

[HTML][HTML] Virtual histology of an entire mouse brain from formalin fixation to paraffin embedding. Part 1: Data acquisition, anatomical feature segmentation, tracking …

G Rodgers, W Kuo, G Schulz, M Scheel, A Migga… - Journal of Neuroscience …, 2021 - Elsevier
Background: Micrometer-resolution neuroimaging with gold-standard conventional histology
requires tissue fixation and embedding. The exchange of solvents for the creation of …

Exploring Alzheimer's disease mouse brain through X-ray phase contrast tomography: From the cell to the organ

L Massimi, I Bukreeva, G Santamaria, M Fratini… - NeuroImage, 2019 - Elsevier
Abstract Alzheimer's disease (AD), the most common form of dementia, is a progressive
neurodegenerative disorder associated with aberrant production of beta-amyloid (Aβ) …

3D virtual pathohistology of lung tissue from Covid-19 patients based on phase contrast X-ray tomography

M Eckermann, J Frohn, M Reichardt, M Osterhoff… - Elife, 2020 - elifesciences.org
We present a three-dimensional (3D) approach for virtual histology and histopathology
based on multi-scale phase contrast x-ray tomography, and use this to investigate the …

Human lung virtual histology by multi-scale x-ray phase-contrast computed tomography

J Reichmann, SE Verleden, M Kühnel… - Physics in Medicine …, 2023 - iopscience.iop.org
Objectives. As the central organ of the respiratory system, the human lung is responsible for
supplying oxygen to the blood, which reaches the erythrocytes by diffusion through the …