The role of de novo mutations in the genetics of autism spectrum disorders

M Ronemus, I Iossifov, D Levy, M Wigler - Nature Reviews Genetics, 2014 - nature.com
The identification of the genetic components of autism spectrum disorders (ASDs) has
advanced rapidly in recent years, particularly with the demonstration of de novo mutations …

The contribution of de novo and rare inherited copy number changes to congenital heart disease in an unselected sample of children with conotruncal defects or …

D Warburton, M Ronemus, J Kline, V Jobanputra… - Human genetics, 2014 - Springer
Congenital heart disease (CHD) is the most common congenital malformation, with
evidence of a strong genetic component. We analyzed data from 223 consecutively …

Evaluation and integration of cell-free DNA signatures for detection of lung cancer

R Xue, X Li, L Yang, M Yang, B Zhang, X Zhang, L Li… - Cancer Letters, 2024 - Elsevier
Cell-free DNA (cfDNA) analysis has shown potential in detecting early-stage lung cancer
based on non-genetic features. To distinguish patients with lung cancer from healthy …

Rare de novo germline copy-number variation in testicular cancer

ZK Stadler, D Esposito, S Shah, J Vijai… - The American Journal of …, 2012 - cell.com
Although heritable factors are an important determinant of risk of early-onset cancer, the
majority of these malignancies appear to occur sporadically without identifiable risk factors …

Evaluation of calling algorithms for array-CGH

S Roy, A Motsinger Reif - Frontiers in genetics, 2013 - frontiersin.org
Copy number variation (CNV) detection has become an integral part many of genetic studies
and new technologies promise to revolutionize our ability to detect and link them to disease …

Expanding probe repertoire and improving reproducibility in human genomic hybridization

SN Dorman, BC Shirley, JHM Knoll… - Nucleic acids …, 2013 - academic.oup.com
Diagnostic DNA hybridization relies on probes composed of single copy (sc) genomic
sequences. Sc sequences in probe design ensure high specificity and avoid cross …

Copy number studies in noisy samples

P Ginsbach, B Chen, Y Jiang, ST Engelter… - Microarrays, 2013 - mdpi.com
System noise was analyzed in 77 Affymetrix 6.0 samples from a previous clinical study of
copy number variation (CNV). Twenty-three samples were classified as eligible for CNV …

[HTML][HTML] Detection of Copy Number Variants by Short Multiply Aggregated Sequence Homologies

V Jobanputra, P Andrews, V Felice, A Abhyankar… - The Journal of Molecular …, 2020 - Elsevier
Chromosomal microarray testing is indicated for patients with diagnoses including
unexplained developmental delay or intellectual disability, autism spectrum disorders, and …

Privacy Preserving RNA-Model Validation Across Laboratories

T Ahmed, MA Carty, S Wenric, JR Dry, AA Salahudeen… - bioRxiv, 2021 - biorxiv.org
Reproducibility of results obtained using RNA data across labs remains a major hurdle in
cancer research. Often, molecular predictors trained on one dataset cannot be applied to …

[PDF][PDF] Zsofia K. Stadler, Diane Esposito, 2, 7 Sohela Shah, 3, 7 Joseph Vijai, Boris Yamrom, 2, 7 Dan Levy, 2 Yoon-ha Lee, 2 Jude Kendall, 2 Anthony Leotta, 2 …

M Wigler, K Offit - academia.edu
Although heritable factors are an important determinant of risk of early-onset cancer, the
majority of these malignancies appear to occur sporadically without identifiable risk factors …