Global and local ancestry and its importance: a review

RC Goli, KG Chishi, I Ganguly, S Singh… - Current …, 2024 - benthamdirect.com
The fastest way to significantly change the composition of a population is through admixture,
an evolutionary mechanism. In animal breeding history, genetic admixture has provided …

Genomic evaluation of feed efficiency component traits in Duroc pigs using 80K, 650K and whole-genome sequence variants

C Zhang, RA Kemp, P Stothard, Z Wang… - Genetics Selection …, 2018 - Springer
Background Increasing marker density was proposed to have potential to improve the
accuracy of genomic prediction for quantitative traits; whole-sequence data is expected to …

Combining individual phenotypes of feed intake with genomic data to improve feed efficiency in sea bass

M Besson, F Allal, B Chatain, A Vergnet, F Clota… - Frontiers in …, 2019 - frontiersin.org
Measuring individual feed intake of fish in farms is complex and precludes selective
breeding for feed conversion ratio (FCR). Here, we estimated the individual FCR of 588 sea …

Genome-wide association study and genomic prediction of tolerance to acute hypoxia in rainbow trout

M Prchal, J D'Ambrosio, H Lagarde, D Lallias, P Patrice… - Aquaculture, 2023 - Elsevier
Hypoxia is one of the major threats to the aquaculture sector resulting in substantial
economic losses to the fish farmers. Thus, tolerance to hypoxia is of high economic interest …

Towards multi-breed genomic evaluations for female fertility of tropical beef cattle

BJ Hayes, NJ Corbet, JM Allen, AR Laing… - Journal of animal …, 2019 - academic.oup.com
Developing accurate genomic evaluations of fertility for tropical beef cattle must deal with at
least two major challenges (i) recording cow fertility traits in extensive production systems on …

Genotyping, the usefulness of imputation to increase SNP density, and imputation methods and tools

F Phocas - Genomic Prediction of Complex Traits: Methods and …, 2022 - Springer
Imputation has become a standard practice in modern genetic research to increase genome
coverage and improve accuracy of genomic selection and genome-wide association study …

Accurate genomic selection using low-density SNP panels preselected by maximum likelihood estimation

S Qu, S Lu, Y Liu, M Li, S Chen - Aquaculture, 2024 - Elsevier
Genomic selection (GS) poses a challenge for the prediction of the genomic estimated
breeding value (GEBV) using a low-density SNP panel. Several methods have been …

Genomic prediction of survival against Vibrio harveyi in leopard coral grouper (Plectropomus leopardus) using GBLUP, weighted GBLUP, and BayesCπ

S Lu, Y Liu, S Qu, Q Zhou, L Wang, T Zhang, W Xu… - Aquaculture, 2023 - Elsevier
Leopard coral grouper (Plectropomus leopardus) is a marine economic fish that widely
inhabits the western Pacific. In recent years, the quantity of wild-captured leopard coral …

Long-range linkage disequilibrium in French beef cattle breeds

A El Hou, D Rocha, E Venot, V Blanquet… - Genetics Selection …, 2021 - Springer
Background Linkage disequilibrium (LD) is a key parameter to study the history of
populations and to identify and fine map quantitative trait loci (QTL) and it has been studied …

Accuracies of genomic prediction for twenty economically important traits in Chinese Simmental beef cattle

B Zhu, P Guo, Z Wang, W Zhang, Y Chen… - Animal …, 2019 - Wiley Online Library
Genomic prediction has been widely utilized to estimate genomic breeding values (GEBV s)
in farm animals. In this study, we conducted genomic prediction for 20 economically …