Single-particle cryo-electron microscopy: Mathematical theory, computational challenges, and opportunities

T Bendory, A Bartesaghi… - IEEE signal processing …, 2020 - ieeexplore.ieee.org
In recent years, an abundance of new molecular structures have been elucidated using cryo-
electron microscopy (cryo-EM), largely due to advances in hardware technology and data …

Computational methods for single-particle electron cryomicroscopy

A Singer, FJ Sigworth - Annual review of biomedical data …, 2020 - annualreviews.org
Single-particle electron cryomicroscopy (cryo-EM) is an increasingly popular technique for
elucidating the three-dimensional (3D) structure of proteins and other biologically significant …

Estimation under group actions: recovering orbits from invariants

AS Bandeira, B Blum-Smith, J Kileel… - Applied and …, 2023 - Elsevier
We study a class of orbit recovery problems in which we observe independent copies of an
unknown element of R p, each linearly acted upon by a random element of some group …

Bispectrum inversion with application to multireference alignment

T Bendory, N Boumal, C Ma, Z Zhao… - IEEE Transactions on …, 2017 - ieeexplore.ieee.org
We consider the problem of estimating a signal from noisy circularly translated versions of
itself, called multireference alignment (MRA). One natural approach to MRA could be to …

The sample complexity of multireference alignment

A Perry, J Weed, AS Bandeira, P Rigollet… - SIAM Journal on …, 2019 - SIAM
The growing role of data-driven approaches to scientific discovery has unveiled a large
class of models that involve latent transformations with a rigid algebraic constraint. Three …

Method of moments for 3D single particle ab initio modeling with non-uniform distribution of viewing angles

N Sharon, J Kileel, Y Khoo, B Landa… - Inverse Problems, 2020 - iopscience.iop.org
Single-particle reconstruction in cryo-electron microscopy (cryo-EM) is an increasingly
popular technique for determining the 3D structure of a molecule from several noisy 2D …

Mathematics for cryo-electron microscopy

A Singer - Proceedings of the International Congress of …, 2018 - World Scientific
Single-particle cryo-electron microscopy (cryo-EM) has recently joined X-ray crystallography
and NMR spectroscopy as a high-resolution structural method for biological …

Optimal rates of estimation for multi-reference alignment

A Bandeira, J Niles-Weed, P Rigollet - Mathematical Statistics and …, 2020 - ems.press
In this paper, we establish optimal rates of adaptive estimation of a vector in the multi-
reference alignment model, a problem with important applications in fields such as signal …

Iterative algorithm for discrete structure recovery

C Gao, AY Zhang - The Annals of Statistics, 2022 - projecteuclid.org
The supplement [46] includes a few more examples and all the technical proofs. We first
analyze approximate ranking in Appendix A. Z/k Z synchronization and permutation …

The Sample Complexity of Sparse Multireference Alignment and Single-Particle Cryo-Electron Microscopy

T Bendory, D Edidin - SIAM Journal on Mathematics of Data Science, 2024 - SIAM
Multireference alignment (MRA) is the problem of recovering a signal from its multiple noisy
copies, each acted upon by a random group element. MRA is mainly motivated by single …