Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation

K Van Roey, B Uyar, RJ Weatheritt, H Dinkel… - Chemical …, 2014 - ACS Publications
The eukaryotic cell is a bustling collection of macromolecules acting cooperatively to
mediate the functions required for cell viability. Specific, context-dependent and tightly …

Predicting the effects of amino acid substitutions on protein function

PC Ng, S Henikoff - Annu. Rev. Genomics Hum. Genet., 2006 - annualreviews.org
Nonsynonymous single nucleotide polymorphisms (nsSNPs) are coding variants that
introduce amino acid changes in their corresponding proteins. Because nsSNPs can affect …

SIFT web server: predicting effects of amino acid substitutions on proteins

NL Sim, P Kumar, J Hu, S Henikoff… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Sorting Intolerant from Tolerant (SIFT) algorithm predicts the effect of coding
variants on protein function. It was first introduced in 2001, with a corresponding website that …

Predicting deleterious amino acid substitutions

PC Ng, S Henikoff - Genome research, 2001 - genome.cshlp.org
Many missense substitutions are identified in single nucleotide polymorphism (SNP) data
and large-scale random mutagenesis projects. Each amino acid substitution potentially …

Human non‐synonymous SNPs: server and survey

V Ramensky, P Bork, S Sunyaev - Nucleic acids research, 2002 - academic.oup.com
Human single nucleotide polymorphisms (SNPs) represent the most frequent type of human
population DNA variation. One of the main goals of SNP research is to understand the …

Amino acid properties and consequences of substitutions

MJ Betts, RB Russell - Bioinformatics for geneticists, 2003 - Wiley Online Library
Amino acid properties and consequences of substitutions Page 297 CHAPTER 14 Amino
Acid Properties and Consequences of Substitutions MATTHEW J. BETTS1 and ROBERT B …

Manganese superoxide dismutase and oxidative stress modulation

G Bresciani, IBM da Cruz… - Advances in clinical …, 2015 - Elsevier
Oxidative stress is characterized by imbalanced reactive oxygen species (ROS) production
and antioxidant defenses. Two main antioxidant systems exist. The nonenzymatic system …

SNPs, protein structure, and disease

Z Wang, J Moult - Human mutation, 2001 - Wiley Online Library
Inherited disease susceptibility in humans is most commonly associated with single
nucleotide polymorphisms (SNPs). The mechanisms by which this occurs are still poorly …

Exome sequencing and the genetic basis of complex traits

A Kiezun, K Garimella, R Do, NO Stitziel, BM Neale… - Nature …, 2012 - nature.com
Exome sequencing and the genetic basis of complex traits | Nature Genetics Skip to main
content Thank you for visiting nature.com. You are using a browser version with limited support …

Prediction of deleterious human alleles

S Sunyaev, V Ramensky, I Koch… - Human molecular …, 2001 - academic.oup.com
Single nucleotide polymorphisms (SNPs) constitute the bulk of human genetic variation,
occurring with an average density of∼ 1/1000 nucleotides of a genotype. SNPs are either …