[HTML][HTML] Identifying biases and their potential solutions in human microbiome studies
Advances in DNA sequencing technology have vastly improved the ability of researchers to
explore the microbial inhabitants of the human body. Unfortunately, while these studies have …
explore the microbial inhabitants of the human body. Unfortunately, while these studies have …
Growth rates of microbes in the oceans
DL Kirchman - Annual review of marine science, 2016 - annualreviews.org
A microbe's growth rate helps to set its ecological success and its contribution to food web
dynamics and biogeochemical processes. Growth rates at the community level are …
dynamics and biogeochemical processes. Growth rates at the community level are …
[HTML][HTML] RESCRIPt: Reproducible sequence taxonomy reference database management
Nucleotide sequence and taxonomy reference databases are critical resources for
widespread applications including marker-gene and metagenome sequencing for …
widespread applications including marker-gene and metagenome sequencing for …
Important contribution of macroalgae to oceanic carbon sequestration
The role of macroalgae in Blue Carbon assessments has been controversial, partially due to
uncertainties about the fate of exported macroalgae. Available evidence suggests that …
uncertainties about the fate of exported macroalgae. Available evidence suggests that …
[HTML][HTML] The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses
T Větrovský, P Baldrian - PloS one, 2013 - journals.plos.org
16S ribosomal RNA currently represents the most important target of study in bacterial
ecology. Its use for the description of bacterial diversity is, however, limited by the presence …
ecology. Its use for the description of bacterial diversity is, however, limited by the presence …
[图书][B] Processes in microbial ecology
DL Kirchman - 2018 - books.google.com
Microbial ecology is the study of interactions among microbes in natural environments and
their roles in biogeochemical cycles, food web dynamics, and the evolution of life. Microbes …
their roles in biogeochemical cycles, food web dynamics, and the evolution of life. Microbes …
The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi‐arid soils
Biogeochemical processes and ecosystemic functions are mostly driven by soil microbial
communities. However, most methods focus on evaluating the total microbial community and …
communities. However, most methods focus on evaluating the total microbial community and …
[HTML][HTML] rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing
Background Microbiome composition is frequently studied by the amplification and high-
throughput sequencing of specific molecular markers (metabarcoding). Various …
throughput sequencing of specific molecular markers (metabarcoding). Various …
Macroecology to unite all life, large and small
Macroecology is the study of the mechanisms underlying general patterns of ecology across
scales. Research in microbial ecology and macroecology have long been detached. Here …
scales. Research in microbial ecology and macroecology have long been detached. Here …
[HTML][HTML] Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S …
S Poirier, O Rué, R Peguilhan, G Coeuret, M Zagorec… - PLoS …, 2018 - journals.plos.org
Meat and seafood spoilage ecosystems harbor extensive bacterial genomic diversity that is
mainly found within a small number of species but within a large number of strains with …
mainly found within a small number of species but within a large number of strains with …